SRARP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	6 studies	37% ± 15%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	99%	218.11	2623 / 2642	90%	2.77	637 / 705
breast	57%	248.02	261 / 459	67%	11.03	751 / 1118
prostate	38%	20.67	94 / 245	49%	8.36	248 / 502
kidney	82%	74.64	73 / 89	3%	0.07	28 / 901
thymus	59%	31.39	387 / 653	2%	0.04	13 / 605
heart	35%	16.61	302 / 861	0%	0	0 / 0
muscle	15%	4.97	122 / 803	0%	0	0 / 0
liver	0%	0	0 / 226	11%	0.43	44 / 406
uterus	5%	2.78	9 / 170	5%	0.18	21 / 459
tonsil	0%	0	0 / 0	7%	0.13	3 / 45
lung	2%	1.28	13 / 578	3%	0.09	29 / 1155
stomach	3%	0.68	9 / 359	1%	0.04	4 / 286
esophagus	2%	0.69	22 / 1445	2%	0.03	3 / 183
intestine	2%	0.69	20 / 966	0%	0.02	2 / 527
ovary	1%	0.12	1 / 180	1%	0.02	4 / 430
adipose	1%	0.45	17 / 1204	0%	0	0 / 0
blood vessel	1%	0.42	15 / 1335	0%	0	0 / 0
skin	1%	0.37	17 / 1809	0%	0	0 / 472
adrenal gland	1%	0.24	2 / 258	0%	0	0 / 230
bladder	0%	0	0 / 21	1%	0.03	3 / 504
pancreas	0%	0	0 / 328	1%	0.02	1 / 178
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1