Name | Number of supported studies | Average coverage | |
---|---|---|---|
mast cell | 19 studies | 29% ± 11% | |
pericyte | 14 studies | 33% ± 18% | |
oligodendrocyte | 12 studies | 43% ± 17% | |
astrocyte | 11 studies | 43% ± 20% | |
microglial cell | 11 studies | 47% ± 14% | |
dendritic cell | 10 studies | 25% ± 10% | |
endothelial cell | 9 studies | 35% ± 9% | |
GABAergic neuron | 8 studies | 53% ± 27% | |
glutamatergic neuron | 8 studies | 54% ± 29% | |
smooth muscle cell | 8 studies | 33% ± 11% | |
oligodendrocyte precursor cell | 8 studies | 38% ± 13% | |
retinal cone cell | 7 studies | 38% ± 15% | |
conventional dendritic cell | 6 studies | 30% ± 15% | |
epithelial cell | 6 studies | 35% ± 17% | |
macrophage | 6 studies | 24% ± 11% | |
interneuron | 5 studies | 48% ± 26% | |
myeloid cell | 4 studies | 24% ± 2% | |
adipocyte | 4 studies | 20% ± 2% | |
monocyte | 4 studies | 22% ± 4% | |
goblet cell | 4 studies | 27% ± 9% | |
erythrocyte | 4 studies | 53% ± 21% | |
fibroblast | 4 studies | 24% ± 2% | |
squamous epithelial cell | 3 studies | 44% ± 20% | |
classical monocyte | 3 studies | 27% ± 7% | |
GABAergic interneuron | 3 studies | 32% ± 7% | |
ciliated cell | 3 studies | 26% ± 9% | |
granule cell | 3 studies | 41% ± 33% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 4162.37 | 2641 / 2642 | 100% | 25.11 | 703 / 705 |
prostate | 99% | 1427.56 | 243 / 245 | 97% | 7.09 | 487 / 502 |
ovary | 100% | 3860.51 | 180 / 180 | 95% | 8.61 | 408 / 430 |
breast | 100% | 2305.95 | 459 / 459 | 91% | 6.15 | 1021 / 1118 |
esophagus | 95% | 1125.86 | 1374 / 1445 | 96% | 6.34 | 175 / 183 |
uterus | 99% | 2567.22 | 168 / 170 | 89% | 9.35 | 410 / 459 |
lung | 99% | 1363.35 | 570 / 578 | 86% | 4.73 | 988 / 1155 |
stomach | 96% | 1883.91 | 345 / 359 | 87% | 4.95 | 249 / 286 |
thymus | 99% | 1323.12 | 645 / 653 | 83% | 4.73 | 504 / 605 |
intestine | 93% | 1880.71 | 903 / 966 | 87% | 4.74 | 460 / 527 |
kidney | 97% | 1053.13 | 86 / 89 | 79% | 3.96 | 714 / 901 |
adrenal gland | 100% | 2234.26 | 258 / 258 | 63% | 2.98 | 145 / 230 |
pancreas | 67% | 558.91 | 219 / 328 | 96% | 7.11 | 170 / 178 |
bladder | 86% | 729.90 | 18 / 21 | 75% | 4.86 | 380 / 504 |
skin | 72% | 709.02 | 1310 / 1809 | 82% | 7.13 | 387 / 472 |
adipose | 100% | 2792.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4130.47 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3451.12 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 5.22 | 43 / 45 |
lymph node | 0% | 0 | 0 / 0 | 90% | 4.09 | 26 / 29 |
peripheral blood | 86% | 1181.42 | 798 / 929 | 0% | 0 | 0 / 0 |
heart | 69% | 562.94 | 597 / 861 | 0% | 0 | 0 / 0 |
muscle | 41% | 302.96 | 327 / 803 | 0% | 0 | 0 / 0 |
liver | 2% | 11.23 | 4 / 226 | 22% | 1.73 | 89 / 406 |
eye | 0% | 0 | 0 / 0 | 14% | 0.39 | 11 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0001824 | Biological process | blastocyst development |
GO_0008306 | Biological process | associative learning |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005815 | Cellular component | microtubule organizing center |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0031941 | Cellular component | filamentous actin |
GO_0045177 | Cellular component | apical part of cell |
GO_0016020 | Cellular component | membrane |
GO_0001650 | Cellular component | fibrillar center |
Gene name | SPECC1 |
Protein name | Sperm antigen with calponin homology and coiled-coil domains 1 Spectrin domain with coiled-coils 1, isoform CRA_b (Sperm antigen with calponin homology and coiled-coil domains 1) Cytospin-B (Nuclear structure protein 5) (NSP5) (Sperm antigen HCMOGT-1) (Sperm antigen with calponin homology and coiled-coil domains 1) |
Synonyms | hCG_28279 CYTSB NSP5 |
Description | |
Accessions | ENST00000678315.1 J3QS22 ENST00000680374.1 [Q5M775-2] ENST00000681202.1 ENST00000676570.1 [Q5M775-2] ENST00000677148.1 ENST00000584527.1 ENST00000680373.1 [Q5M775-5] ENST00000680019.1 A0A7P0T8Y6 J3KRN9 ENST00000581399.6 J3KSG2 ENST00000680124.1 ENST00000679058.1 [Q5M775-1] J3QKL1 ENST00000680740.1 ENST00000677914.1 [Q5M775-1] ENST00000679801.1 ENST00000583463.6 ENST00000681593.1 [Q5M775-2] A0A7P0Z4I1 ENST00000678321.1 ENST00000681116.1 ENST00000580934.2 A0A7P0TAS3 ENST00000681545.1 Q5M775 A0A7I2V486 ENST00000681564.1 A0A7I2YQJ3 ENST00000679819.1 ENST00000582226.5 A0A7P0TB87 ENST00000261503.9 [Q5M775-1] ENST00000678019.1 ENST00000395530.6 [Q5M775-4] ENST00000578321.2 ENST00000680830.1 A0A7I2V5G2 ENST00000395527.9 [Q5M775-1] ENST00000581973.7 ENST00000472876.5 ENST00000395529.7 [Q5M775-2] ENST00000395525.7 [Q5M775-3] A0A7I2V416 ENST00000680572.1 [Q5M775-2] ENST00000680604.1 ENST00000395522.6 [Q5M775-5] J3KRB9 J3QQM0 ENST00000467722.3 A0A7P0TBP2 A0A7I2V451 A0A7P0T9K0 A0A7I2V562 ENST00000681875.1 ENST00000679255.1 [Q5M775-1] ENST00000679049.1 [Q5M775-2] ENST00000679740.1 A0A7P0TBD3 ENST00000583482.7 ENST00000583528.6 ENST00000679048.1 |