Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 41% ± 26% | |
GABAergic neuron | 7 studies | 40% ± 23% | |
oligodendrocyte | 7 studies | 25% ± 9% | |
astrocyte | 6 studies | 29% ± 15% | |
oligodendrocyte precursor cell | 6 studies | 27% ± 10% | |
ciliated cell | 5 studies | 26% ± 9% | |
macrophage | 5 studies | 18% ± 1% | |
interneuron | 5 studies | 42% ± 25% | |
endothelial cell | 4 studies | 28% ± 11% | |
neuron | 4 studies | 25% ± 9% | |
GABAergic interneuron | 3 studies | 18% ± 3% | |
granule cell | 3 studies | 24% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 37% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 1152.46 | 180 / 180 | 100% | 3.67 | 430 / 430 |
thymus | 100% | 1018.14 | 653 / 653 | 100% | 7.26 | 605 / 605 |
kidney | 100% | 677.83 | 89 / 89 | 100% | 5.64 | 899 / 901 |
brain | 100% | 806.15 | 2635 / 2642 | 100% | 5.92 | 705 / 705 |
breast | 100% | 566.81 | 459 / 459 | 100% | 4.63 | 1115 / 1118 |
pancreas | 100% | 433.10 | 327 / 328 | 100% | 4.74 | 178 / 178 |
prostate | 100% | 703.16 | 244 / 245 | 100% | 4.80 | 502 / 502 |
adrenal gland | 100% | 577.83 | 258 / 258 | 99% | 6.55 | 228 / 230 |
bladder | 100% | 533.29 | 21 / 21 | 98% | 3.39 | 492 / 504 |
intestine | 100% | 471.95 | 963 / 966 | 97% | 3.01 | 513 / 527 |
stomach | 100% | 390.95 | 358 / 359 | 96% | 2.96 | 274 / 286 |
lung | 98% | 444.40 | 569 / 578 | 97% | 3.42 | 1117 / 1155 |
skin | 100% | 435.16 | 1806 / 1809 | 94% | 2.93 | 442 / 472 |
esophagus | 97% | 416.59 | 1407 / 1445 | 94% | 2.83 | 172 / 183 |
uterus | 100% | 763.34 | 170 / 170 | 87% | 2.98 | 400 / 459 |
liver | 92% | 230.56 | 208 / 226 | 83% | 1.85 | 339 / 406 |
spleen | 100% | 369.54 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.87 | 1 / 1 |
adipose | 100% | 514.87 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 407.18 | 1324 / 1335 | 0% | 0 | 0 / 0 |
muscle | 96% | 268.57 | 768 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 1.64 | 27 / 29 |
heart | 93% | 295.68 | 801 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 3.15 | 70 / 80 |
tonsil | 0% | 0 | 0 / 0 | 73% | 1.68 | 33 / 45 |
peripheral blood | 21% | 49.69 | 199 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045494 | Biological process | photoreceptor cell maintenance |
GO_0007601 | Biological process | visual perception |
GO_1903621 | Biological process | protein localization to photoreceptor connecting cilium |
GO_1903546 | Biological process | protein localization to photoreceptor outer segment |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0005930 | Cellular component | axoneme |
GO_0036064 | Cellular component | ciliary basal body |
GO_0032391 | Cellular component | photoreceptor connecting cilium |
GO_0005829 | Cellular component | cytosol |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0120200 | Cellular component | rod photoreceptor outer segment |
GO_0120206 | Cellular component | photoreceptor distal connecting cilium |
GO_0005515 | Molecular function | protein binding |
Gene name | SPATA7 |
Protein name | Spermatogenesis associated 7 Spermatogenesis-associated protein 7 (HSD-3.1) (Spermatogenesis-associated protein HSD3) Epididymis secretory protein Li 296 (Spermatogenesis associated 7, isoform CRA_f) SPATA7 protein |
Synonyms | HSD3 HEL-S-296 hCG_21084 |
Description | FUNCTION: Involved in the maintenance of both rod and cone photoreceptor cells (By similarity). It is required for recruitment and proper localization of RPGRIP1 to the photoreceptor connecting cilium (CC), as well as photoreceptor-specific localization of proximal CC proteins at the distal CC (By similarity). Maintenance of protein localization at the photoreceptor-specific distal CC is essential for normal microtubule stability and to prevent photoreceptor degeneration (By similarity). . |
Accessions | G3V2V4 ENST00000556553.5 [Q9P0W8-2] G3V5V8 ENST00000553885.5 ENST00000557724.5 G3V4A9 Q6FI63 G3V5H6 H0YJ93 ENST00000045347.11 [Q9P0W8-3] ENST00000554802.1 G3V491 G3V287 ENST00000556406.5 G3V5N2 Q9P0W8 ENST00000393545.9 [Q9P0W8-1] ENST00000555515.5 V9HVY9 G3V3D2 ENST00000553908.5 ENST00000356583.9 [Q9P0W8-2] ENST00000556870.5 G3V2E1 ENST00000555534.5 H0YJ48 ENST00000555401.5 ENST00000554168.5 ENST00000557248.5 ENST00000555356.5 ENST00000555715.5 |