SPATA17 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	18 studies	47% ± 15%	Explore
ependymal cell	3 studies	65% ± 10%	Explore
astrocyte	3 studies	34% ± 20%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	95%	61.70	232 / 245	70%	1.24	350 / 502
breast	73%	38.35	336 / 459	81%	2.81	905 / 1118
kidney	100%	170.29	89 / 89	49%	1.10	440 / 901
thymus	100%	134.22	652 / 653	44%	0.78	269 / 605
ovary	74%	26.23	134 / 180	67%	2.05	290 / 430
lung	89%	131.29	512 / 578	40%	0.91	462 / 1155
brain	87%	96.94	2289 / 2642	36%	1.19	254 / 705
uterus	82%	51.72	139 / 170	34%	1.13	154 / 459
bladder	76%	22.43	16 / 21	34%	0.81	171 / 504
pancreas	78%	21.61	257 / 328	26%	0.59	47 / 178
ureter	0%	0	0 / 0	100%	1.04	1 / 1
skin	80%	27.94	1450 / 1809	14%	0.26	66 / 472
adrenal gland	91%	42.24	235 / 258	1%	0.02	3 / 230
intestine	75%	21.18	723 / 966	15%	0.26	78 / 527
heart	82%	32.62	703 / 861	0%	0	0 / 0
esophagus	58%	16.93	844 / 1445	15%	0.33	27 / 183
stomach	45%	10.26	160 / 359	16%	0.25	46 / 286
adipose	50%	12.57	604 / 1204	0%	0	0 / 0
muscle	31%	7.57	251 / 803	0%	0	0 / 0
blood vessel	21%	4.08	276 / 1335	0%	0	0 / 0
liver	7%	1.36	16 / 226	11%	0.26	43 / 406
tonsil	0%	0	0 / 0	9%	0.12	4 / 45
spleen	5%	0.80	11 / 241	0%	0	0 / 0
peripheral blood	2%	0.92	17 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0