Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 17 studies | 39% ± 19% | |
oligodendrocyte | 14 studies | 42% ± 15% | |
oligodendrocyte precursor cell | 13 studies | 50% ± 19% | |
glutamatergic neuron | 12 studies | 61% ± 20% | |
GABAergic neuron | 11 studies | 55% ± 24% | |
fibroblast | 9 studies | 32% ± 12% | |
neuron | 7 studies | 50% ± 19% | |
endothelial cell | 7 studies | 44% ± 16% | |
smooth muscle cell | 7 studies | 27% ± 9% | |
interneuron | 6 studies | 67% ± 20% | |
retinal ganglion cell | 6 studies | 32% ± 10% | |
retina horizontal cell | 6 studies | 37% ± 14% | |
pericyte | 6 studies | 28% ± 5% | |
amacrine cell | 5 studies | 36% ± 10% | |
type II pneumocyte | 5 studies | 21% ± 5% | |
granule cell | 4 studies | 45% ± 19% | |
retinal bipolar neuron | 4 studies | 23% ± 7% | |
cardiac muscle cell | 4 studies | 25% ± 2% | |
GABAergic interneuron | 3 studies | 58% ± 3% | |
GABAergic amacrine cell | 3 studies | 41% ± 8% | |
ON-bipolar cell | 3 studies | 29% ± 8% | |
glycinergic amacrine cell | 3 studies | 36% ± 6% | |
retinal pigment epithelial cell | 3 studies | 34% ± 10% | |
ependymal cell | 3 studies | 42% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3497.91 | 2640 / 2642 | 100% | 24.50 | 704 / 705 |
adrenal gland | 100% | 1679.47 | 258 / 258 | 96% | 19.03 | 220 / 230 |
prostate | 100% | 2297.71 | 244 / 245 | 95% | 8.21 | 477 / 502 |
thymus | 99% | 1212.82 | 647 / 653 | 89% | 8.47 | 541 / 605 |
ovary | 100% | 2694.13 | 180 / 180 | 57% | 3.40 | 245 / 430 |
uterus | 99% | 1528.80 | 168 / 170 | 37% | 3.85 | 168 / 459 |
kidney | 92% | 742.84 | 82 / 89 | 43% | 1.90 | 387 / 901 |
breast | 97% | 933.27 | 443 / 459 | 35% | 1.44 | 388 / 1118 |
esophagus | 71% | 2048.85 | 1025 / 1445 | 57% | 3.60 | 105 / 183 |
lung | 89% | 631.76 | 513 / 578 | 37% | 2.11 | 429 / 1155 |
bladder | 100% | 3085.81 | 21 / 21 | 25% | 1.25 | 128 / 504 |
intestine | 80% | 2309.04 | 772 / 966 | 35% | 1.58 | 183 / 527 |
stomach | 66% | 1007.89 | 238 / 359 | 43% | 3.15 | 124 / 286 |
blood vessel | 100% | 3319.08 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2530.96 | 803 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 1715.01 | 850 / 861 | 0% | 0 | 0 / 0 |
adipose | 98% | 1151.03 | 1184 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 7.51 | 68 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 3.93 | 23 / 29 |
pancreas | 7% | 39.86 | 24 / 328 | 71% | 3.52 | 126 / 178 |
skin | 22% | 139.54 | 405 / 1809 | 51% | 3.22 | 243 / 472 |
spleen | 70% | 421.80 | 168 / 241 | 0% | 0 | 0 / 0 |
liver | 12% | 63.62 | 26 / 226 | 39% | 2.62 | 157 / 406 |
tonsil | 0% | 0 | 0 / 0 | 18% | 1.57 | 8 / 45 |
peripheral blood | 0% | 0.61 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0042472 | Biological process | inner ear morphogenesis |
GO_0050890 | Biological process | cognition |
GO_0007605 | Biological process | sensory perception of sound |
GO_0090102 | Biological process | cochlea development |
GO_0007626 | Biological process | locomotory behavior |
GO_0048513 | Biological process | animal organ development |
GO_0005634 | Cellular component | nucleus |
GO_0032184 | Molecular function | SUMO polymer binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | SOBP |
Protein name | Sine oculis binding protein homolog SOBP protein Sine oculis-binding protein homolog (Jackson circler protein 1) |
Synonyms | JXC1 |
Description | FUNCTION: Implicated in development of the cochlea. . FUNCTION: Implicated in development of the cochlea. . FUNCTION: Implicated in development of the cochlea. . |
Accessions | ENST00000618129.1 ENST00000317357.10 Q24K27 A7XYQ1 A0A0C4DGT7 |