Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 4 studies | 31% ± 13% | |
endothelial cell | 3 studies | 21% ± 2% | |
epithelial cell | 3 studies | 26% ± 6% | |
GABAergic neuron | 3 studies | 28% ± 10% | |
interneuron | 3 studies | 25% ± 12% | |
oligodendrocyte | 3 studies | 18% ± 2% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1000.89 | 1445 / 1445 | 100% | 12.15 | 183 / 183 |
ovary | 100% | 1642.76 | 180 / 180 | 100% | 10.51 | 430 / 430 |
stomach | 100% | 917.65 | 359 / 359 | 100% | 11.62 | 286 / 286 |
bladder | 100% | 1279.10 | 21 / 21 | 100% | 9.77 | 503 / 504 |
breast | 100% | 1293.13 | 459 / 459 | 100% | 11.57 | 1115 / 1118 |
intestine | 100% | 1261.23 | 966 / 966 | 100% | 11.36 | 525 / 527 |
prostate | 100% | 1388.52 | 245 / 245 | 100% | 9.24 | 500 / 502 |
lung | 100% | 1013.04 | 576 / 578 | 100% | 9.90 | 1154 / 1155 |
brain | 99% | 949.68 | 2621 / 2642 | 100% | 7.86 | 705 / 705 |
uterus | 100% | 1598.39 | 170 / 170 | 99% | 11.46 | 454 / 459 |
thymus | 100% | 1292.58 | 653 / 653 | 99% | 7.92 | 597 / 605 |
pancreas | 99% | 716.93 | 326 / 328 | 99% | 7.63 | 176 / 178 |
liver | 100% | 822.66 | 226 / 226 | 96% | 7.21 | 389 / 406 |
kidney | 100% | 951.45 | 89 / 89 | 95% | 7.68 | 852 / 901 |
adrenal gland | 100% | 829.27 | 258 / 258 | 94% | 5.15 | 217 / 230 |
skin | 100% | 1259.94 | 1808 / 1809 | 94% | 10.27 | 443 / 472 |
adipose | 100% | 1235.84 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 8.89 | 29 / 29 |
muscle | 100% | 1156.77 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1380.88 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 10.58 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.37 | 1 / 1 |
blood vessel | 100% | 1116.06 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1069.56 | 853 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 671.66 | 808 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 80% | 5.64 | 64 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008380 | Biological process | RNA splicing |
GO_0006397 | Biological process | mRNA processing |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005689 | Cellular component | U12-type spliceosomal complex |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | SNRNP48 |
Protein name | Small nuclear ribonucleoprotein U11/U12 subunit 48 U11/U12 small nuclear ribonucleoprotein 48 kDa protein (U11/U12 snRNP 48 kDa protein) (U11/U12-48K) |
Synonyms | C6orf151 |
Description | FUNCTION: Likely involved in U12-type 5' splice site recognition. . |
Accessions | ENST00000634363.1 ENST00000342415.6 [Q6IEG0-1] A0A0U1RQZ2 Q6IEG0 |