Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 4 studies | 20% ± 4% | |
epithelial cell | 4 studies | 32% ± 9% | |
glutamatergic neuron | 4 studies | 25% ± 6% | |
oligodendrocyte | 4 studies | 20% ± 1% | |
ciliated cell | 3 studies | 27% ± 1% | |
dendritic cell | 3 studies | 23% ± 7% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 951.89 | 258 / 258 | 100% | 17.35 | 230 / 230 |
esophagus | 100% | 1033.93 | 1445 / 1445 | 100% | 9.11 | 183 / 183 |
liver | 100% | 662.77 | 226 / 226 | 100% | 13.46 | 406 / 406 |
ovary | 100% | 929.11 | 180 / 180 | 100% | 10.59 | 430 / 430 |
prostate | 100% | 1379.98 | 245 / 245 | 100% | 19.32 | 502 / 502 |
skin | 100% | 1106.02 | 1809 / 1809 | 100% | 15.66 | 472 / 472 |
stomach | 100% | 882.01 | 359 / 359 | 100% | 10.57 | 286 / 286 |
thymus | 100% | 1427.82 | 653 / 653 | 100% | 20.95 | 605 / 605 |
uterus | 100% | 1249.99 | 170 / 170 | 100% | 17.26 | 459 / 459 |
brain | 100% | 1027.00 | 2640 / 2642 | 100% | 14.42 | 705 / 705 |
lung | 100% | 1046.42 | 578 / 578 | 100% | 11.67 | 1154 / 1155 |
kidney | 100% | 1072.96 | 89 / 89 | 100% | 14.49 | 900 / 901 |
intestine | 100% | 1058.93 | 966 / 966 | 100% | 11.84 | 526 / 527 |
bladder | 100% | 980.19 | 21 / 21 | 100% | 15.76 | 502 / 504 |
breast | 100% | 1021.96 | 459 / 459 | 100% | 15.29 | 1113 / 1118 |
pancreas | 99% | 546.91 | 325 / 328 | 100% | 14.26 | 178 / 178 |
adipose | 100% | 948.92 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 22.19 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.01 | 29 / 29 |
muscle | 100% | 1824.08 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1495.08 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.45 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 21.25 | 1 / 1 |
blood vessel | 100% | 1255.26 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 1252.27 | 858 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 988.62 | 908 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0008380 | Biological process | RNA splicing |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005689 | Cellular component | U12-type spliceosomal complex |
GO_0005634 | Cellular component | nucleus |
GO_0017069 | Molecular function | snRNA binding |
GO_0003729 | Molecular function | mRNA binding |
Gene name | SNRNP35 |
Protein name | U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12 snRNP 35 kDa protein) (U11/U12-35K) (Protein HM-1) (U1 snRNP-binding protein homolog) |
Synonyms | HM1 U1SNRNPBP |
Description | |
Accessions | ENST00000350887.5 [Q16560-1] ENST00000526639.3 [Q16560-1] ENST00000412157.2 [Q16560-2] Q16560 |