SNPH report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	5 studies	45% ± 24%	Explore
GABAergic neuron	4 studies	46% ± 19%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	39% ± 22%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	98%	9060.04	2596 / 2642	100%	27.85	703 / 705
thymus	92%	1327.21	603 / 653	91%	7.48	553 / 605
prostate	92%	1508.26	225 / 245	90%	6.23	450 / 502
adrenal gland	65%	697.75	168 / 258	96%	29.15	221 / 230
uterus	93%	1476.41	158 / 170	45%	3.29	206 / 459
stomach	76%	914.26	273 / 359	54%	4.18	154 / 286
esophagus	63%	1104.31	904 / 1445	63%	4.35	115 / 183
intestine	75%	1393.87	723 / 966	49%	3.00	257 / 527
bladder	62%	1009.57	13 / 21	57%	2.96	285 / 504
kidney	37%	320.71	33 / 89	77%	4.83	695 / 901
skin	24%	233.41	437 / 1809	78%	8.57	369 / 472
pancreas	11%	90.23	37 / 328	84%	5.65	150 / 178
lung	42%	371.38	240 / 578	54%	2.67	618 / 1155
breast	19%	159.85	89 / 459	72%	9.93	801 / 1118
ovary	26%	248.05	47 / 180	54%	2.75	233 / 430
blood vessel	79%	928.86	1060 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	71%	4.11	57 / 80
lymph node	0%	0	0 / 0	66%	2.48	19 / 29
heart	62%	680.66	532 / 861	0%	0	0 / 0
muscle	61%	875.39	491 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	22%	0.86	10 / 45
adipose	14%	114.04	170 / 1204	0%	0	0 / 0
liver	0%	0	0 / 226	11%	0.47	46 / 406
spleen	10%	70.42	23 / 241	0%	0	0 / 0
peripheral blood	2%	17.99	22 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1