Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 8 studies | 26% ± 11% | |
endothelial cell | 6 studies | 25% ± 12% | |
epithelial cell | 4 studies | 28% ± 14% | |
macrophage | 4 studies | 19% ± 3% | |
fibroblast | 3 studies | 25% ± 4% | |
GABAergic neuron | 3 studies | 19% ± 1% | |
glutamatergic neuron | 3 studies | 25% ± 4% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 18% ± 3% | |
basal cell | 3 studies | 23% ± 3% | |
astrocyte | 3 studies | 23% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 500.83 | 1445 / 1445 | 100% | 14.36 | 183 / 183 |
ovary | 100% | 627.55 | 180 / 180 | 100% | 8.82 | 430 / 430 |
breast | 100% | 642.20 | 459 / 459 | 100% | 8.39 | 1117 / 1118 |
prostate | 100% | 610.03 | 245 / 245 | 100% | 9.27 | 501 / 502 |
uterus | 100% | 610.87 | 170 / 170 | 100% | 15.33 | 458 / 459 |
thymus | 100% | 625.86 | 653 / 653 | 100% | 13.35 | 603 / 605 |
lung | 100% | 654.06 | 576 / 578 | 100% | 15.66 | 1153 / 1155 |
kidney | 100% | 539.61 | 89 / 89 | 99% | 10.25 | 893 / 901 |
brain | 99% | 367.19 | 2606 / 2642 | 100% | 10.89 | 705 / 705 |
bladder | 100% | 650.62 | 21 / 21 | 98% | 11.66 | 496 / 504 |
adrenal gland | 100% | 824.40 | 258 / 258 | 98% | 9.32 | 226 / 230 |
intestine | 100% | 417.54 | 965 / 966 | 97% | 6.06 | 513 / 527 |
stomach | 96% | 295.50 | 345 / 359 | 97% | 5.34 | 278 / 286 |
skin | 100% | 1246.34 | 1807 / 1809 | 93% | 9.52 | 439 / 472 |
pancreas | 87% | 182.29 | 286 / 328 | 99% | 9.80 | 176 / 178 |
liver | 92% | 211.57 | 207 / 226 | 82% | 3.69 | 332 / 406 |
adipose | 100% | 781.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 17.36 | 29 / 29 |
spleen | 100% | 560.91 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.71 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.69 | 1 / 1 |
blood vessel | 100% | 641.95 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 495.59 | 837 / 861 | 0% | 0 | 0 / 0 |
muscle | 93% | 239.56 | 749 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 64% | 360.81 | 593 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 64% | 3.65 | 51 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042795 | Biological process | snRNA transcription by RNA polymerase II |
GO_0042796 | Biological process | snRNA transcription by RNA polymerase III |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0019185 | Cellular component | snRNA-activating protein complex |
GO_0016251 | Molecular function | RNA polymerase II general transcription initiation factor activity |
GO_0000995 | Molecular function | RNA polymerase III general transcription initiation factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
Gene name | SNAPC1 |
Protein name | snRNA-activating protein complex subunit 1 (SNAPc subunit 1) (Proximal sequence element-binding transcription factor subunit gamma) (PSE-binding factor subunit gamma) (PTF subunit gamma) (Small nuclear RNA-activating complex polypeptide 1) (snRNA-activating protein complex 43 kDa subunit) (SNAPc 43 kDa subunit) |
Synonyms | SNAP43 |
Description | FUNCTION: Part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. Binds to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Recruits TBP and BRF2 to the U6 snRNA TATA box. . |
Accessions | ENST00000216294.5 Q16533 |