Name | Number of supported studies | Average coverage | |
---|---|---|---|
smooth muscle cell | 25 studies | 37% ± 18% | |
pericyte | 24 studies | 31% ± 9% | |
endothelial cell | 16 studies | 28% ± 8% | |
endothelial cell of lymphatic vessel | 15 studies | 25% ± 8% | |
myofibroblast cell | 12 studies | 32% ± 15% | |
fibroblast | 10 studies | 20% ± 4% | |
connective tissue cell | 6 studies | 28% ± 7% | |
capillary endothelial cell | 5 studies | 23% ± 3% | |
retinal cone cell | 5 studies | 38% ± 20% | |
brush cell | 4 studies | 30% ± 9% | |
glomerular endothelial cell | 3 studies | 28% ± 5% | |
endothelial cell of artery | 3 studies | 19% ± 4% | |
epithelial cell | 3 studies | 20% ± 4% | |
Mueller cell | 3 studies | 20% ± 6% | |
endothelial cell of vascular tree | 3 studies | 19% ± 2% | |
endothelial cell of sinusoid | 3 studies | 43% ± 28% | |
muscle cell | 3 studies | 53% ± 26% | |
goblet cell | 3 studies | 23% ± 4% |
Insufficient scRNA-seq data for expression of SMTN at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 93% | 29628.37 | 228 / 245 | 100% | 54.91 | 502 / 502 |
uterus | 98% | 38738.79 | 166 / 170 | 95% | 28.84 | 437 / 459 |
bladder | 90% | 60535.43 | 19 / 21 | 98% | 27.86 | 496 / 504 |
intestine | 82% | 64209.07 | 789 / 966 | 100% | 33.41 | 526 / 527 |
esophagus | 80% | 66728.18 | 1163 / 1445 | 100% | 35.41 | 183 / 183 |
breast | 70% | 7251.19 | 323 / 459 | 95% | 16.24 | 1065 / 1118 |
stomach | 60% | 27077.96 | 214 / 359 | 100% | 42.32 | 286 / 286 |
lung | 55% | 6046.03 | 317 / 578 | 95% | 22.71 | 1102 / 1155 |
skin | 35% | 3569.68 | 627 / 1809 | 96% | 23.45 | 453 / 472 |
ovary | 40% | 5044.79 | 72 / 180 | 90% | 13.14 | 386 / 430 |
kidney | 24% | 2025.93 | 21 / 89 | 85% | 17.99 | 767 / 901 |
thymus | 29% | 2660.51 | 191 / 653 | 75% | 8.40 | 454 / 605 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.13 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.45 | 1 / 1 |
blood vessel | 100% | 55564.66 | 1331 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 1% | 51.86 | 2 / 328 | 98% | 24.29 | 175 / 178 |
heart | 85% | 10416.24 | 729 / 861 | 0% | 0 | 0 / 0 |
brain | 1% | 117.75 | 35 / 2642 | 74% | 7.38 | 519 / 705 |
adipose | 73% | 8829.69 | 877 / 1204 | 0% | 0 | 0 / 0 |
spleen | 73% | 8809.01 | 175 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 72% | 7.36 | 21 / 29 |
adrenal gland | 4% | 361.48 | 10 / 258 | 63% | 8.78 | 145 / 230 |
liver | 1% | 104.02 | 3 / 226 | 64% | 8.65 | 259 / 406 |
eye | 0% | 0 | 0 / 0 | 44% | 3.33 | 35 / 80 |
muscle | 29% | 2576.26 | 231 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006939 | Biological process | smooth muscle contraction |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0007517 | Biological process | muscle organ development |
GO_0005815 | Cellular component | microtubule organizing center |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005856 | Cellular component | cytoskeleton |
GO_0031941 | Cellular component | filamentous actin |
GO_0005737 | Cellular component | cytoplasm |
GO_0003779 | Molecular function | actin binding |
GO_0008307 | Molecular function | structural constituent of muscle |
Gene name | SMTN |
Protein name | Smoothelin |
Synonyms | SMSMO |
Description | FUNCTION: Structural protein of the cytoskeleton. |
Accessions | ENST00000612341.4 ENST00000438223.5 C9JGQ0 A0A096LNK9 P53814 A0A087X1R1 ENST00000440425.6 C9JP19 C9JV14 ENST00000358743.5 [P53814-6] ENST00000404574.5 ENST00000426927.5 ENST00000432777.5 ENST00000416786.5 ENST00000347557.6 [P53814-1] C9JQZ8 A0A087WVP4 B5MCI0 ENST00000422839.5 ENST00000619644.5 ENST00000431481.1 ENST00000624247.1 H7C372 C9JYU8 ENST00000333137.12 [P53814-5] C9JBH9 |