Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 10 studies | 28% ± 10% | |
microglial cell | 8 studies | 25% ± 8% | |
astrocyte | 8 studies | 35% ± 15% | |
endothelial cell | 7 studies | 28% ± 13% | |
oligodendrocyte precursor cell | 7 studies | 24% ± 8% | |
macrophage | 6 studies | 29% ± 7% | |
interneuron | 5 studies | 34% ± 18% | |
GABAergic neuron | 4 studies | 43% ± 14% | |
glutamatergic neuron | 4 studies | 50% ± 13% | |
adipocyte | 4 studies | 19% ± 1% | |
epithelial cell | 3 studies | 31% ± 18% | |
ependymal cell | 3 studies | 30% ± 14% | |
ciliated cell | 3 studies | 23% ± 7% | |
neuron | 3 studies | 54% ± 23% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 36% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 531.46 | 2638 / 2642 | 100% | 7.64 | 705 / 705 |
breast | 100% | 572.71 | 458 / 459 | 99% | 11.58 | 1111 / 1118 |
ovary | 100% | 475.97 | 180 / 180 | 99% | 7.85 | 426 / 430 |
thymus | 100% | 885.37 | 653 / 653 | 99% | 6.12 | 598 / 605 |
bladder | 100% | 525.71 | 21 / 21 | 99% | 7.41 | 497 / 504 |
prostate | 100% | 763.94 | 245 / 245 | 99% | 7.16 | 495 / 502 |
pancreas | 100% | 487.98 | 327 / 328 | 99% | 5.44 | 176 / 178 |
lung | 99% | 479.12 | 573 / 578 | 99% | 7.83 | 1144 / 1155 |
intestine | 100% | 512.02 | 962 / 966 | 98% | 6.82 | 518 / 527 |
kidney | 100% | 581.24 | 89 / 89 | 98% | 6.61 | 879 / 901 |
esophagus | 99% | 441.50 | 1424 / 1445 | 99% | 9.26 | 181 / 183 |
uterus | 100% | 419.39 | 170 / 170 | 97% | 6.90 | 447 / 459 |
stomach | 99% | 439.05 | 357 / 359 | 98% | 7.48 | 280 / 286 |
adrenal gland | 100% | 590.62 | 257 / 258 | 96% | 4.63 | 220 / 230 |
skin | 100% | 726.87 | 1809 / 1809 | 91% | 5.92 | 428 / 472 |
liver | 100% | 503.10 | 226 / 226 | 77% | 3.56 | 314 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 5.16 | 29 / 29 |
spleen | 100% | 776.35 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.89 | 1 / 1 |
adipose | 100% | 476.36 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 451.34 | 1326 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 5.89 | 44 / 45 |
heart | 93% | 268.26 | 798 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 76% | 407.42 | 709 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 63% | 2.62 | 50 / 80 |
muscle | 50% | 81.85 | 402 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0005515 | Molecular function | protein binding |
Gene name | SLX4IP |
Protein name | Protein SLX4IP (SLX4-interacting protein) SLX4 interacting protein |
Synonyms | C20orf94 |
Description | |
Accessions | ENST00000334534.10 ENST00000488816.1 Q5VYV7 H0YD23 |