Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 29 studies | 34% ± 16% | |
smooth muscle cell | 25 studies | 40% ± 18% | |
pericyte | 23 studies | 31% ± 13% | |
mesothelial cell | 12 studies | 54% ± 20% | |
glutamatergic neuron | 11 studies | 48% ± 17% | |
adipocyte | 10 studies | 50% ± 14% | |
connective tissue cell | 9 studies | 29% ± 13% | |
neuron | 6 studies | 35% ± 14% | |
endothelial cell | 5 studies | 28% ± 12% | |
adventitial cell | 5 studies | 36% ± 20% | |
myofibroblast cell | 5 studies | 30% ± 12% | |
granule cell | 4 studies | 60% ± 28% | |
GABAergic neuron | 4 studies | 31% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 99% | 9307.45 | 649 / 653 | 97% | 40.65 | 588 / 605 |
breast | 100% | 14038.39 | 457 / 459 | 84% | 11.11 | 937 / 1118 |
ovary | 84% | 5558.43 | 151 / 180 | 71% | 9.83 | 304 / 430 |
lung | 100% | 13811.90 | 577 / 578 | 54% | 5.53 | 620 / 1155 |
adrenal gland | 72% | 3070.11 | 187 / 258 | 80% | 50.72 | 185 / 230 |
esophagus | 84% | 6207.32 | 1208 / 1445 | 68% | 7.67 | 124 / 183 |
kidney | 78% | 4558.70 | 69 / 89 | 70% | 17.13 | 633 / 901 |
bladder | 100% | 13826.95 | 21 / 21 | 43% | 4.27 | 219 / 504 |
uterus | 99% | 8166.28 | 169 / 170 | 33% | 4.37 | 153 / 459 |
skin | 92% | 9087.45 | 1665 / 1809 | 32% | 3.71 | 149 / 472 |
intestine | 80% | 5439.53 | 772 / 966 | 31% | 2.69 | 163 / 527 |
prostate | 62% | 3379.55 | 153 / 245 | 48% | 3.20 | 239 / 502 |
adipose | 100% | 21092.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 18655.61 | 1335 / 1335 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.63 | 1 / 1 |
stomach | 47% | 2720.78 | 168 / 359 | 47% | 5.34 | 133 / 286 |
pancreas | 5% | 154.03 | 18 / 328 | 74% | 9.83 | 131 / 178 |
heart | 61% | 5067.79 | 528 / 861 | 0% | 0 | 0 / 0 |
brain | 33% | 1266.15 | 881 / 2642 | 23% | 1.47 | 160 / 705 |
spleen | 51% | 1677.44 | 122 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 49% | 4.74 | 22 / 45 |
liver | 0% | 15.61 | 1 / 226 | 14% | 1.14 | 56 / 406 |
muscle | 12% | 375.99 | 97 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.09 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0035385 | Biological process | Roundabout signaling pathway |
GO_0070100 | Biological process | negative regulation of chemokine-mediated signaling pathway |
GO_0003181 | Biological process | atrioventricular valve morphogenesis |
GO_0003180 | Biological process | aortic valve morphogenesis |
GO_0032870 | Biological process | cellular response to hormone stimulus |
GO_0021834 | Biological process | chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration |
GO_0048846 | Biological process | axon extension involved in axon guidance |
GO_0050919 | Biological process | negative chemotaxis |
GO_0060412 | Biological process | ventricular septum morphogenesis |
GO_0061364 | Biological process | apoptotic process involved in luteolysis |
GO_0051414 | Biological process | response to cortisol |
GO_0007411 | Biological process | axon guidance |
GO_0030308 | Biological process | negative regulation of cell growth |
GO_0005615 | Cellular component | extracellular space |
GO_0005739 | Cellular component | mitochondrion |
GO_0008201 | Molecular function | heparin binding |
GO_0048495 | Molecular function | Roundabout binding |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | SLIT3 |
Protein name | Alternative protein SLIT3 Slit homolog 3 protein (Slit-3) (Multiple epidermal growth factor-like domains protein 5) (Multiple EGF-like domains protein 5) |
Synonyms | SLIL2 UNQ691/PRO1336 MEGF5 KIAA0814 |
Description | FUNCTION: May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors. |
Accessions | L8E8Y7 ENST00000332966.8 [O75094-4] O75094 ENST00000519560.6 [O75094-1] |