Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 20 studies | 67% ± 16% | |
goblet cell | 11 studies | 36% ± 14% | |
epithelial cell | 9 studies | 38% ± 13% | |
respiratory goblet cell | 7 studies | 41% ± 19% | |
secretory cell | 7 studies | 34% ± 9% | |
enterocyte | 7 studies | 28% ± 9% | |
club cell | 4 studies | 37% ± 9% | |
deuterosomal cell | 4 studies | 28% ± 6% | |
duct epithelial cell | 4 studies | 26% ± 11% | |
transit amplifying cell | 4 studies | 22% ± 3% | |
luminal cell of prostate epithelium | 4 studies | 40% ± 9% | |
squamous epithelial cell | 3 studies | 48% ± 21% | |
mucus secreting cell | 3 studies | 30% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 98% | 11951.11 | 240 / 245 | 100% | 769.51 | 502 / 502 |
pancreas | 93% | 693.77 | 304 / 328 | 87% | 253.16 | 154 / 178 |
stomach | 80% | 8062.96 | 288 / 359 | 91% | 238.67 | 260 / 286 |
intestine | 64% | 9878.25 | 619 / 966 | 95% | 282.15 | 501 / 527 |
lung | 96% | 2155.21 | 553 / 578 | 54% | 93.90 | 629 / 1155 |
breast | 62% | 778.65 | 286 / 459 | 75% | 146.28 | 843 / 1118 |
kidney | 100% | 3710.56 | 89 / 89 | 37% | 77.81 | 336 / 901 |
ovary | 54% | 166.18 | 98 / 180 | 67% | 75.88 | 289 / 430 |
bladder | 57% | 1277.24 | 12 / 21 | 59% | 106.58 | 299 / 504 |
adrenal gland | 99% | 1055.29 | 255 / 258 | 4% | 2.95 | 9 / 230 |
uterus | 71% | 512.98 | 120 / 170 | 30% | 68.64 | 136 / 459 |
thymus | 69% | 254.58 | 451 / 653 | 3% | 2.80 | 16 / 605 |
esophagus | 10% | 91.26 | 143 / 1445 | 44% | 162.88 | 81 / 183 |
spleen | 54% | 179.79 | 130 / 241 | 0% | 0 | 0 / 0 |
skin | 17% | 49.76 | 311 / 1809 | 0% | 0.33 | 2 / 472 |
adipose | 10% | 31.42 | 117 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 7% | 4.22 | 3 / 45 |
liver | 2% | 4.66 | 5 / 226 | 2% | 3.28 | 9 / 406 |
blood vessel | 1% | 3.15 | 7 / 1335 | 0% | 0 | 0 / 0 |
brain | 0% | 1.40 | 13 / 2642 | 0% | 0 | 0 / 705 |
peripheral blood | 0% | 14.44 | 3 / 929 | 0% | 0 | 0 / 0 |
heart | 0% | 0.23 | 1 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0061526 | Biological process | acetylcholine secretion |
GO_0006656 | Biological process | phosphatidylcholine biosynthetic process |
GO_0008292 | Biological process | acetylcholine biosynthetic process |
GO_0015871 | Biological process | choline transport |
GO_0032475 | Biological process | otolith formation |
GO_0030307 | Biological process | positive regulation of cell growth |
GO_0055085 | Biological process | transmembrane transport |
GO_0035675 | Biological process | neuromast hair cell development |
GO_0030974 | Biological process | thiamine pyrophosphate transmembrane transport |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0090422 | Molecular function | thiamine pyrophosphate transmembrane transporter activity |
GO_0015297 | Molecular function | antiporter activity |
GO_0015220 | Molecular function | choline transmembrane transporter activity |
Gene name | SLC44A4 |
Protein name | Choline transporter-like protein Choline transporter-like protein 4 (Solute carrier family 44 member 4) (Thiamine pyrophosphate transporter 1) (hTPPT1) |
Synonyms | NG22 C6orf29 TPPT1 CTL4 UNQ441/PRO874 |
Description | FUNCTION: Choline transporter that plays a role in the choline-acetylcholine system and is required to the efferent innervation of hair cells in the olivocochlear bundle for the maintenance of physiological function of outer hair cells and the protection of hair cells from acoustic injury (By similarity) . Also described as a thiamine pyrophosphate transporter in colon, may mediate the absorption of microbiota-generated thiamine pyrophosphate and contribute to host thiamine (vitamin B1) homeostasis . .; FUNCTION: [Isoform 3]: Has also thiamine pyrophosphate transporter activity. . FUNCTION: Choline transporter. . FUNCTION: Choline transporter. . FUNCTION: Choline transporter. . |
Accessions | ENST00000414427.1 ENST00000548188.1 [Q53GD3-3] ENST00000547684.1 [Q53GD3-3] ENST00000450933.5 ENST00000553121.5 ENST00000550401.2 A0A0G2JL76 ENST00000546461.3 [Q53GD3-3] ENST00000229729.11 [Q53GD3-1] A0A0G2JIN1 ENST00000553147.1 ENST00000414684.5 ENST00000458130.5 H0Y5I3 ENST00000549663.5 [Q53GD3-4] ENST00000433046.5 Q53GD3 ENST00000550821.4 ENST00000544672.5 [Q53GD3-3] ENST00000551168.3 [Q53GD3-4] ENST00000549677.5 [Q53GD3-4] ENST00000383379.8 [Q53GD3-1] ENST00000442152.6 ENST00000453831.6 [Q53GD3-1] ENST00000417894.6 ENST00000547493.1 ENST00000441920.5 ENST00000425238.6 [Q53GD3-1] ENST00000415517.6 ENST00000547288.5 ENST00000431710.5 ENST00000375562.8 [Q53GD3-4] |