Name | Number of supported studies | Average coverage | |
---|---|---|---|
type I pneumocyte | 11 studies | 73% ± 13% | |
type II pneumocyte | 11 studies | 58% ± 16% | |
endothelial cell | 9 studies | 29% ± 9% | |
mesothelial cell | 6 studies | 41% ± 10% | |
erythrocyte | 5 studies | 25% ± 7% | |
epithelial cell | 5 studies | 33% ± 14% | |
goblet cell | 5 studies | 32% ± 13% | |
retinal ganglion cell | 4 studies | 38% ± 11% | |
erythroblast | 4 studies | 29% ± 6% | |
hematopoietic precursor cell | 3 studies | 23% ± 3% | |
macrophage | 3 studies | 23% ± 5% | |
classical monocyte | 3 studies | 27% ± 4% | |
extravillous trophoblast | 3 studies | 28% ± 8% | |
mucus secreting cell | 3 studies | 26% ± 4% | |
club cell | 3 studies | 21% ± 6% | |
astrocyte | 3 studies | 29% ± 20% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 32% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 99% | 1081.89 | 647 / 653 | 98% | 16.10 | 592 / 605 |
lung | 100% | 13736.46 | 578 / 578 | 94% | 39.61 | 1091 / 1155 |
breast | 99% | 1387.78 | 453 / 459 | 95% | 30.64 | 1061 / 1118 |
ovary | 100% | 1331.53 | 180 / 180 | 91% | 19.11 | 392 / 430 |
pancreas | 100% | 3706.11 | 328 / 328 | 90% | 12.58 | 161 / 178 |
prostate | 93% | 956.89 | 228 / 245 | 92% | 18.29 | 463 / 502 |
liver | 100% | 1372.46 | 225 / 226 | 81% | 12.30 | 329 / 406 |
brain | 94% | 841.90 | 2473 / 2642 | 87% | 12.35 | 613 / 705 |
skin | 95% | 1738.76 | 1720 / 1809 | 82% | 15.51 | 387 / 472 |
bladder | 95% | 821.38 | 20 / 21 | 77% | 20.59 | 387 / 504 |
uterus | 82% | 744.38 | 140 / 170 | 88% | 19.21 | 403 / 459 |
intestine | 73% | 1323.73 | 708 / 966 | 95% | 35.53 | 502 / 527 |
kidney | 64% | 532.75 | 57 / 89 | 91% | 27.96 | 823 / 901 |
stomach | 26% | 183.88 | 92 / 359 | 92% | 24.21 | 264 / 286 |
esophagus | 33% | 226.07 | 471 / 1445 | 84% | 14.12 | 154 / 183 |
adrenal gland | 62% | 359.11 | 159 / 258 | 50% | 6.31 | 116 / 230 |
lymph node | 0% | 0 | 0 / 0 | 100% | 52.39 | 29 / 29 |
adipose | 100% | 4093.40 | 1200 / 1204 | 0% | 0 | 0 / 0 |
spleen | 97% | 860.63 | 233 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 9.99 | 37 / 45 |
blood vessel | 77% | 680.36 | 1034 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 70% | 1816.20 | 649 / 929 | 0% | 0 | 0 / 0 |
heart | 56% | 1807.37 | 479 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 5% | 0.31 | 4 / 80 |
muscle | 2% | 8.88 | 14 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015694 | Biological process | mercury ion transport |
GO_0042391 | Biological process | regulation of membrane potential |
GO_0071577 | Biological process | zinc ion transmembrane transport |
GO_0098711 | Biological process | iron ion import across plasma membrane |
GO_0030026 | Biological process | intracellular manganese ion homeostasis |
GO_0030198 | Biological process | extracellular matrix organization |
GO_1990079 | Biological process | cartilage homeostasis |
GO_0061757 | Biological process | leukocyte adhesion to arterial endothelial cell |
GO_0071421 | Biological process | manganese ion transmembrane transport |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0050728 | Biological process | negative regulation of inflammatory response |
GO_0006882 | Biological process | intracellular zinc ion homeostasis |
GO_0098849 | Biological process | cellular detoxification of cadmium ion |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0006525 | Biological process | arginine metabolic process |
GO_0006829 | Biological process | zinc ion transport |
GO_0030003 | Biological process | intracellular monoatomic cation homeostasis |
GO_0071578 | Biological process | zinc ion import across plasma membrane |
GO_0006487 | Biological process | protein N-linked glycosylation |
GO_0015701 | Biological process | bicarbonate transport |
GO_0097080 | Biological process | plasma membrane selenite transport |
GO_1990540 | Biological process | mitochondrial manganese ion transmembrane transport |
GO_0043124 | Biological process | negative regulation of canonical NF-kappaB signal transduction |
GO_0070574 | Biological process | cadmium ion transmembrane transport |
GO_0006824 | Biological process | cobalt ion transport |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0031090 | Cellular component | organelle membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0005385 | Molecular function | zinc ion transmembrane transporter activity |
GO_0140412 | Molecular function | zinc:bicarbonate symporter activity |
GO_0140410 | Molecular function | monoatomic cation:bicarbonate symporter activity |
Gene name | SLC39A8 |
Protein name | Solute carrier family 39 member 8 Metal cation symporter ZIP8 (BCG-induced integral membrane protein in monocyte clone 103 protein) (LIV-1 subfamily of ZIP zinc transporter 6) (LZT-Hs6) (Solute carrier family 39 member 8) (Zrt- and Irt-like protein 8) (ZIP-8) |
Synonyms | PP3105 BIGM103 ZIP8 |
Description | FUNCTION: Electroneutral divalent metal cation:bicarbonate symporter of the plasma membrane mediating the cellular uptake of zinc and manganese, two divalent metal cations important for development, tissue homeostasis and immunity . Transports an electroneutral complex composed of a divalent metal cation and two bicarbonate anions or alternatively a bicarbonate and a selenite anion . Thereby, it also contributes to the cellular uptake of selenium, an essential trace metal and micronutrient . Also imports cadmium a non-essential metal which is cytotoxic and carcinogenic . May also transport iron and cobalt through membranes . Through zinc import, indirectly regulates the metal-dependent transcription factor MTF1 and the expression of some metalloproteases involved in cartilage catabolism and also probably heart development . Also indirectly regulates the expression of proteins involved in cell morphology and cytoskeleton organization . Indirectly controls innate immune function and inflammatory response by regulating zinc cellular uptake which in turn modulates the expression of genes specific of these processes . Protects, for instance, cells from injury and death at the onset of inflammation . By regulating zinc influx into monocytes also directly modulates their adhesion to endothelial cells and arteries (By similarity). Reclaims manganese from the bile at the apical membrane of hepatocytes, thereby regulating the activity of the manganese-dependent enzymes through the systemic levels of the nutrient . Also participates in manganese reabsorption in the proximal tubule of the kidney . By mediating the extracellular uptake of manganese by cells of the blood-brain barrier, may also play a role in the transport of the micronutrient to the brain . With manganese cellular uptake also participates in mitochondrial proper function . Finally, also probably functions intracellularly, translocating zinc from lysosome to cytosol to indirectly enhance the expression of specific genes during TCR-mediated T cell activation . . |
Accessions | ENST00000683221.1 A0A804HKX2 Q9C0K1 ENST00000683412.1 [Q9C0K1-1] A0A804HJR0 A0A804HHS9 A0A804HKQ9 ENST00000683634.1 ENST00000683173.1 A0A804HHT0 ENST00000356736.5 [Q9C0K1-1] ENST00000682932.1 [Q9C0K1-1] ENST00000682227.1 [Q9C0K1-1] ENST00000424970.7 ENST00000683462.1 ENST00000682243.1 ENST00000683706.1 ENST00000684386.1 ENST00000683916.1 ENST00000394833.6 [Q9C0K1-1] A0A804HKW0 ENST00000684289.1 ENST00000682549.1 |