Name | Number of supported studies | Average coverage | |
---|---|---|---|
enterocyte | 6 studies | 48% ± 15% | |
epithelial cell | 6 studies | 39% ± 11% | |
epithelial cell of proximal tubule | 5 studies | 22% ± 5% | |
transit amplifying cell | 5 studies | 17% ± 1% | |
hepatocyte | 5 studies | 27% ± 19% | |
goblet cell | 4 studies | 23% ± 3% | |
intestinal crypt stem cell | 4 studies | 26% ± 6% | |
progenitor cell | 4 studies | 32% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 4 studies | 23% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 8813.78 | 226 / 226 | 80% | 94.93 | 326 / 406 |
intestine | 99% | 4151.28 | 961 / 966 | 81% | 72.74 | 425 / 527 |
kidney | 100% | 5453.48 | 89 / 89 | 75% | 57.23 | 674 / 901 |
stomach | 96% | 25.56 | 346 / 359 | 75% | 62.49 | 214 / 286 |
pancreas | 100% | 17983.21 | 328 / 328 | 52% | 22.65 | 92 / 178 |
bladder | 95% | 24.86 | 20 / 21 | 22% | 22.66 | 113 / 504 |
esophagus | 88% | 22.43 | 1267 / 1445 | 30% | 11.08 | 54 / 183 |
lung | 94% | 21.31 | 542 / 578 | 11% | 4.80 | 126 / 1155 |
uterus | 99% | 42.08 | 169 / 170 | 5% | 2.58 | 24 / 459 |
ovary | 99% | 41.59 | 179 / 180 | 2% | 0.52 | 8 / 430 |
prostate | 99% | 41.31 | 243 / 245 | 0% | 0 | 0 / 502 |
thymus | 99% | 35.42 | 646 / 653 | 0% | 0 | 0 / 605 |
spleen | 98% | 34.51 | 235 / 241 | 0% | 0 | 0 / 0 |
adrenal gland | 96% | 20.27 | 247 / 258 | 0% | 0.10 | 1 / 230 |
breast | 93% | 34.77 | 428 / 459 | 0% | 0 | 0 / 1118 |
blood vessel | 91% | 21.29 | 1220 / 1335 | 0% | 0 | 0 / 0 |
adipose | 86% | 23.08 | 1036 / 1204 | 0% | 0 | 0 / 0 |
brain | 80% | 17.31 | 2123 / 2642 | 0% | 0 | 0 / 705 |
skin | 72% | 11.50 | 1296 / 1809 | 0% | 0 | 0 / 472 |
heart | 67% | 9.96 | 580 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 48% | 7.64 | 447 / 929 | 0% | 0 | 0 / 0 |
muscle | 44% | 4.99 | 356 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030003 | Biological process | intracellular monoatomic cation homeostasis |
GO_0030509 | Biological process | BMP signaling pathway |
GO_0071578 | Biological process | zinc ion import across plasma membrane |
GO_0061351 | Biological process | neural precursor cell proliferation |
GO_0015701 | Biological process | bicarbonate transport |
GO_0071577 | Biological process | zinc ion transmembrane transport |
GO_0048026 | Biological process | positive regulation of mRNA splicing, via spliceosome |
GO_0070315 | Biological process | G1 to G0 transition involved in cell differentiation |
GO_0001654 | Biological process | eye development |
GO_0034224 | Biological process | cellular response to zinc ion starvation |
GO_0006829 | Biological process | zinc ion transport |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0005385 | Molecular function | zinc ion transmembrane transporter activity |
GO_0140410 | Molecular function | monoatomic cation:bicarbonate symporter activity |
GO_0003674 | Molecular function | molecular_function |
Gene name | SLC39A5 |
Protein name | Solute carrier family 39 member 5 Zinc transporter ZIP5 (Solute carrier family 39 member 5) (Zrt- and Irt-like protein 5) (ZIP-5) |
Synonyms | ZIP5 |
Description | FUNCTION: Uniporter that transports zinc(2+) into polarized cells of enterocytes, pancreatic acinar and endoderm cells across the basolateral membrane and participates, notably, in zinc excretion from the intestine by the uptake of zinc from the blood into the intestine (By similarity). The transport mechanism is temperature- and concentration-dependent and saturable (By similarity). In addition, is also a high affinity copper transporter in vitro . Also may regulate glucose-stimulated insulin secretion (GSIS) in islets primarily through the zinc-activated SIRT1-PPARGC1A axis (By similarity). Could regulate the BMP/TGF-beta (bone morphogenetic protein/transforming growth factor-beta) signaling pathway and modulates extracellular matrix (ECM) proteins of the sclera . Plays a role in eye development . . |
Accessions | C9JPS6 ENST00000454355.7 C9JB28 ENST00000417965.5 ENST00000419753.5 C9JIB2 ENST00000424625.5 C9JVC6 C9JPS5 ENST00000266980.8 ENST00000437277.1 Q6ZMH5 ENST00000436633.5 |