Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal cone cell | 4 studies | 42% ± 15% | |
retinal bipolar neuron | 3 studies | 23% ± 2% | |
retinal rod cell | 3 studies | 21% ± 4% | |
Mueller cell | 3 studies | 23% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 4 studies | 21% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1756.37 | 2635 / 2642 | 100% | 56.19 | 702 / 705 |
liver | 100% | 19795.21 | 226 / 226 | 96% | 364.74 | 389 / 406 |
pancreas | 100% | 2849.65 | 328 / 328 | 38% | 5.94 | 68 / 178 |
ovary | 93% | 730.03 | 168 / 180 | 28% | 3.43 | 121 / 430 |
muscle | 94% | 1349.27 | 751 / 803 | 0% | 0 | 0 / 0 |
heart | 78% | 369.14 | 670 / 861 | 0% | 0 | 0 / 0 |
thymus | 49% | 149.86 | 317 / 653 | 23% | 2.46 | 139 / 605 |
kidney | 63% | 533.06 | 56 / 89 | 7% | 1.29 | 61 / 901 |
breast | 20% | 101.10 | 90 / 459 | 21% | 4.06 | 232 / 1118 |
stomach | 20% | 57.85 | 72 / 359 | 10% | 3.15 | 30 / 286 |
eye | 0% | 0 | 0 / 0 | 18% | 3.26 | 14 / 80 |
uterus | 2% | 6.03 | 4 / 170 | 10% | 1.20 | 48 / 459 |
esophagus | 3% | 11.32 | 46 / 1445 | 8% | 1.60 | 15 / 183 |
skin | 6% | 41.23 | 100 / 1809 | 5% | 0.45 | 23 / 472 |
intestine | 1% | 2.15 | 8 / 966 | 7% | 0.91 | 38 / 527 |
prostate | 7% | 15.53 | 16 / 245 | 1% | 0.08 | 7 / 502 |
lung | 1% | 1.45 | 3 / 578 | 5% | 1.11 | 58 / 1155 |
adrenal gland | 0% | 0 | 0 / 258 | 4% | 0.60 | 9 / 230 |
bladder | 0% | 0 | 0 / 21 | 4% | 0.32 | 19 / 504 |
adipose | 3% | 13.20 | 35 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 2% | 6.41 | 31 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 1% | 2.93 | 5 / 929 | 0% | 0 | 0 / 0 |
spleen | 0% | 16.60 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006868 | Biological process | glutamine transport |
GO_0150104 | Biological process | transport across blood-brain barrier |
GO_0051365 | Biological process | cellular response to potassium ion starvation |
GO_1903811 | Biological process | L-asparagine import across plasma membrane |
GO_0007565 | Biological process | female pregnancy |
GO_0010585 | Biological process | glutamine secretion |
GO_0006814 | Biological process | sodium ion transport |
GO_0080144 | Biological process | intracellular amino acid homeostasis |
GO_0015808 | Biological process | L-alanine transport |
GO_0003333 | Biological process | amino acid transmembrane transport |
GO_0006865 | Biological process | amino acid transport |
GO_2000487 | Biological process | positive regulation of glutamine transport |
GO_0015817 | Biological process | histidine transport |
GO_1903803 | Biological process | L-glutamine import across plasma membrane |
GO_1902024 | Biological process | L-histidine transport |
GO_0006867 | Biological process | asparagine transport |
GO_1903810 | Biological process | L-histidine import across plasma membrane |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0015171 | Molecular function | amino acid transmembrane transporter activity |
GO_0005290 | Molecular function | L-histidine transmembrane transporter activity |
GO_0015180 | Molecular function | L-alanine transmembrane transporter activity |
GO_0015186 | Molecular function | L-glutamine transmembrane transporter activity |
GO_0140830 | Molecular function | L-glutamine, sodium:proton antiporter activity |
GO_0140831 | Molecular function | L-asparagine, sodium:proton antiporter activity |
GO_0140832 | Molecular function | L-histidine, sodium:proton antiporter activity |
GO_0005295 | Molecular function | neutral L-amino acid:sodium symporter activity |
GO_0015182 | Molecular function | L-asparagine transmembrane transporter activity |
Gene name | SLC38A3 |
Protein name | Sodium-coupled neutral amino acid transporter 3 (N-system amino acid transporter 1) (Na(+)-coupled neutral amino acid transporter 3) (Solute carrier family 38 member 3) (System N amino acid transporter 1) Solute carrier family 38 member 3 |
Synonyms | SNAT3 NAT1 SN1 G17 |
Description | FUNCTION: Symporter that cotransports specific neutral amino acids and sodium ions, coupled to an H(+) antiporter activity . Mainly participates in the glutamate-GABA-glutamine cycle in brain where it transports L-glutamine from astrocytes in the intercellular space for the replenishment of both neurotransmitters glutamate and gamma-aminobutyric acid (GABA) in neurons and also functions as the major influx transporter in ganglion cells mediating the uptake of glutamine (By similarity). The transport activity is specific for L-glutamine, L-histidine and L-asparagine . The transport is electroneutral coupled to the cotransport of 1 Na(+) and the antiport of 1 H(+) (By similarity). The transport is pH dependent, saturable, Li(+) tolerant and functions in both direction depending on the concentration gradients of its substrates and cotransported ions . Also mediates an amino acid-gated H(+) conductance that is not stoichiometrically coupled to the amino acid transport but which influences the ionic gradients that drive the amino acid transport (By similarity). In addition, may play a role in nitrogen metabolism, amino acid homeostasis, glucose metabolism and renal ammoniagenesis (By similarity). . |
Accessions | A0A087WVW8 ENST00000621456.2 ENST00000610458.4 A0A087WWS5 A0A087X175 A0A087X1Q4 Q99624 ENST00000614032.5 ENST00000621714.4 ENST00000445096.5 |