Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 5 studies | 23% ± 7% | |
endothelial cell | 4 studies | 21% ± 6% | |
epithelial cell | 4 studies | 23% ± 5% | |
oligodendrocyte | 4 studies | 23% ± 3% | |
GABAergic neuron | 3 studies | 43% ± 10% | |
glutamatergic neuron | 3 studies | 52% ± 10% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 5% | |
adipocyte | 3 studies | 20% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 37% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1561.74 | 459 / 459 | 100% | 29.92 | 1118 / 1118 |
esophagus | 100% | 1332.14 | 1445 / 1445 | 100% | 33.14 | 183 / 183 |
intestine | 100% | 1381.97 | 966 / 966 | 100% | 23.37 | 527 / 527 |
lung | 100% | 1427.34 | 578 / 578 | 100% | 30.19 | 1155 / 1155 |
ovary | 100% | 1522.36 | 180 / 180 | 100% | 29.84 | 430 / 430 |
stomach | 100% | 1191.14 | 359 / 359 | 100% | 26.20 | 285 / 286 |
bladder | 100% | 1480.62 | 21 / 21 | 100% | 23.13 | 502 / 504 |
prostate | 100% | 1360.20 | 245 / 245 | 100% | 21.01 | 500 / 502 |
uterus | 100% | 1528.86 | 170 / 170 | 100% | 25.24 | 457 / 459 |
thymus | 100% | 1593.31 | 653 / 653 | 100% | 20.76 | 602 / 605 |
pancreas | 100% | 1083.77 | 328 / 328 | 99% | 19.32 | 177 / 178 |
kidney | 100% | 1023.26 | 89 / 89 | 98% | 19.13 | 883 / 901 |
brain | 98% | 625.37 | 2586 / 2642 | 100% | 15.96 | 705 / 705 |
liver | 100% | 854.35 | 226 / 226 | 98% | 13.64 | 396 / 406 |
skin | 100% | 1822.16 | 1809 / 1809 | 97% | 22.43 | 456 / 472 |
adrenal gland | 100% | 1609.69 | 258 / 258 | 95% | 14.66 | 219 / 230 |
adipose | 100% | 1628.02 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.56 | 29 / 29 |
muscle | 100% | 1109.73 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1545.39 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 24.38 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.73 | 1 / 1 |
blood vessel | 100% | 1286.67 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 838.37 | 845 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 1080.04 | 834 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 12.35 | 70 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071579 | Biological process | regulation of zinc ion transport |
GO_1904257 | Biological process | zinc ion import into Golgi lumen |
GO_0006829 | Biological process | zinc ion transport |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005385 | Molecular function | zinc ion transmembrane transporter activity |
GO_0140826 | Molecular function | zinc:proton antiporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SLC30A6 |
Protein name | Solute carrier family 30 (Zinc transporter), member 6, isoform CRA_b (Solute carrier family 30 member 6) Solute carrier family 30 (Zinc transporter), member 6, isoform CRA_c (cDNA FLJ39353 fis, clone PEBLM2002432, highly similar to Homo sapiens solute carrier family 30 (zinc transporter), member 6 (SLC30A6), mRNA) (cDNA FLJ45816 fis, clone NT2RP7019682, highly similar to Homo sapiens solute carrier family 30 (zinc transporter), member 6 (SLC30A6), mRNA) Solute carrier family 30 member 6 Zinc transporter 6 (ZnT-6) (Solute carrier family 30 member 6) |
Synonyms | hCG_23082 ZNT6 |
Description | FUNCTION: Has probably no intrinsic transporter activity but together with SLC30A5 forms a functional zinc ion:proton antiporter heterodimer, mediating zinc entry into the lumen of organelles along the secretory pathway . As part of that zinc ion:proton antiporter, contributes to zinc ion homeostasis within the early secretory pathway and regulates the activation and folding of enzymes like alkaline phosphatases and enzymes involved in phosphatidylinositol glycan anchor biosynthesis . . |
Accessions | ENST00000406369.2 F8WEL5 ENST00000357055.7 [Q6NXT4-4] C9JZR9 Q6NXT4 B3KU87 ENST00000454324.5 ENST00000440718.5 F8WCU3 ENST00000379343.6 [Q6NXT4-2] ENST00000449777.5 ENST00000457724.2 F8WD78 ENST00000435660.5 [Q6NXT4-3] ENST00000282587.9 [Q6NXT4-1] B5MCR8 |