Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 16 studies | 86% ± 17% | |
oligodendrocyte precursor cell | 13 studies | 44% ± 19% | |
glutamatergic neuron | 11 studies | 67% ± 23% | |
GABAergic neuron | 10 studies | 58% ± 20% | |
retinal ganglion cell | 7 studies | 40% ± 18% | |
retinal cone cell | 7 studies | 78% ± 14% | |
interneuron | 6 studies | 45% ± 21% | |
amacrine cell | 5 studies | 38% ± 25% | |
retina horizontal cell | 5 studies | 59% ± 20% | |
astrocyte | 4 studies | 44% ± 15% | |
endothelial cell | 4 studies | 48% ± 12% | |
microglial cell | 4 studies | 42% ± 12% | |
ON-bipolar cell | 4 studies | 39% ± 17% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 66% ± 14% | |
neuron | 3 studies | 63% ± 5% | |
GABAergic interneuron | 3 studies | 63% ± 12% | |
granule cell | 3 studies | 47% ± 30% | |
retinal bipolar neuron | 3 studies | 25% ± 9% | |
OFF-bipolar cell | 3 studies | 33% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 6501.86 | 2631 / 2642 | 95% | 16.04 | 667 / 705 |
adrenal gland | 17% | 280.11 | 43 / 258 | 64% | 29.12 | 147 / 230 |
breast | 0% | 0 | 0 / 459 | 54% | 2.00 | 608 / 1118 |
uterus | 25% | 425.09 | 42 / 170 | 5% | 0.14 | 23 / 459 |
pancreas | 0% | 0 | 0 / 328 | 20% | 0.50 | 36 / 178 |
esophagus | 2% | 26.55 | 24 / 1445 | 15% | 0.31 | 27 / 183 |
lung | 0% | 0 | 0 / 578 | 13% | 0.26 | 151 / 1155 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.20 | 5 / 45 |
prostate | 0% | 0 | 0 / 245 | 8% | 0.23 | 38 / 502 |
stomach | 1% | 7.78 | 5 / 359 | 5% | 0.12 | 15 / 286 |
skin | 0% | 0 | 0 / 1809 | 6% | 0.24 | 30 / 472 |
kidney | 0% | 0 | 0 / 89 | 6% | 0.54 | 56 / 901 |
bladder | 0% | 0 | 0 / 21 | 5% | 0.09 | 27 / 504 |
intestine | 0% | 0.70 | 1 / 966 | 3% | 0.08 | 18 / 527 |
ovary | 0% | 0 | 0 / 180 | 3% | 0.04 | 14 / 430 |
eye | 0% | 0 | 0 / 0 | 3% | 0.14 | 2 / 80 |
thymus | 0% | 0 | 0 / 653 | 2% | 0.07 | 13 / 605 |
liver | 0% | 0 | 0 / 226 | 0% | 0.01 | 2 / 406 |
muscle | 0% | 2.23 | 3 / 803 | 0% | 0 | 0 / 0 |
adipose | 0% | 0.52 | 1 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0.43 | 1 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007612 | Biological process | learning |
GO_0034220 | Biological process | monoatomic ion transmembrane transport |
GO_0006811 | Biological process | monoatomic ion transport |
GO_0098703 | Biological process | calcium ion import across plasma membrane |
GO_0006874 | Biological process | intracellular calcium ion homeostasis |
GO_0060292 | Biological process | long-term synaptic depression |
GO_0060291 | Biological process | long-term synaptic potentiation |
GO_0051649 | Biological process | establishment of localization in cell |
GO_0071805 | Biological process | potassium ion transmembrane transport |
GO_0070509 | Biological process | calcium ion import |
GO_0070050 | Biological process | neuron cellular homeostasis |
GO_0007613 | Biological process | memory |
GO_0035725 | Biological process | sodium ion transmembrane transport |
GO_0070588 | Biological process | calcium ion transmembrane transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0001917 | Cellular component | photoreceptor inner segment |
GO_0015293 | Molecular function | symporter activity |
GO_0008273 | Molecular function | calcium, potassium:sodium antiporter activity |
GO_0005262 | Molecular function | calcium channel activity |
Gene name | SLC24A2 |
Protein name | Sodium/potassium/calcium exchanger 2 (Na(+)/K(+)/Ca(2+)-exchange protein 2) (Retinal cone Na-Ca+K exchanger) (Solute carrier family 24 member 2) |
Synonyms | NCKX2 |
Description | FUNCTION: Calcium, potassium:sodium antiporter that transports 1 Ca(2+) and 1 K(+) in exchange for 4 Na(+) . Required for learming and memory by regulating neuronal Ca(2+), which is essential for the development of synaptic plasticity (By similarity). . |
Accessions | ENST00000341998.7 [Q9UI40-1] ENST00000286344.4 [Q9UI40-2] Q9UI40 |