Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 12 studies | 37% ± 11% | |
astrocyte | 9 studies | 30% ± 12% | |
glutamatergic neuron | 8 studies | 36% ± 24% | |
epithelial cell of proximal tubule | 6 studies | 45% ± 24% | |
GABAergic neuron | 4 studies | 45% ± 13% | |
endothelial cell | 3 studies | 23% ± 5% | |
interneuron | 3 studies | 42% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 99% | 844.82 | 242 / 245 | 99% | 22.60 | 498 / 502 |
brain | 100% | 1302.26 | 2640 / 2642 | 80% | 5.28 | 561 / 705 |
skin | 96% | 292.39 | 1735 / 1809 | 78% | 22.74 | 367 / 472 |
liver | 99% | 1225.19 | 224 / 226 | 62% | 29.58 | 250 / 406 |
thymus | 96% | 236.23 | 627 / 653 | 55% | 2.42 | 334 / 605 |
ovary | 97% | 403.16 | 175 / 180 | 46% | 2.34 | 196 / 430 |
pancreas | 100% | 560.57 | 328 / 328 | 39% | 1.45 | 70 / 178 |
breast | 88% | 262.46 | 403 / 459 | 50% | 2.78 | 554 / 1118 |
stomach | 94% | 480.92 | 337 / 359 | 42% | 4.92 | 121 / 286 |
kidney | 99% | 23365.12 | 88 / 89 | 37% | 12.03 | 331 / 901 |
bladder | 81% | 188.48 | 17 / 21 | 44% | 3.32 | 224 / 504 |
adrenal gland | 97% | 398.37 | 249 / 258 | 27% | 2.73 | 63 / 230 |
uterus | 92% | 248.67 | 157 / 170 | 30% | 1.88 | 138 / 459 |
lung | 78% | 166.96 | 450 / 578 | 40% | 2.54 | 464 / 1155 |
intestine | 41% | 80.06 | 396 / 966 | 42% | 3.70 | 219 / 527 |
eye | 0% | 0 | 0 / 0 | 83% | 4.90 | 66 / 80 |
esophagus | 49% | 93.37 | 712 / 1445 | 32% | 1.74 | 59 / 183 |
adipose | 76% | 190.95 | 917 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 70% | 145.07 | 939 / 1335 | 0% | 0 | 0 / 0 |
heart | 28% | 50.59 | 241 / 861 | 0% | 0 | 0 / 0 |
muscle | 23% | 42.69 | 183 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 13% | 0.49 | 6 / 45 |
spleen | 7% | 11.34 | 17 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.67 | 4 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0034775 | Biological process | glutathione transmembrane transport |
GO_0150104 | Biological process | transport across blood-brain barrier |
GO_0071422 | Biological process | succinate transmembrane transport |
GO_0015746 | Biological process | citrate transport |
GO_0015742 | Biological process | alpha-ketoglutarate transport |
GO_0006835 | Biological process | dicarboxylic acid transport |
GO_0035725 | Biological process | sodium ion transmembrane transport |
GO_0006869 | Biological process | lipid transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0015137 | Molecular function | citrate transmembrane transporter activity |
GO_0005310 | Molecular function | dicarboxylic acid transmembrane transporter activity |
GO_0017153 | Molecular function | sodium:dicarboxylate symporter activity |
GO_0015362 | Molecular function | high-affinity sodium:dicarboxylate symporter activity |
GO_0034634 | Molecular function | glutathione transmembrane transporter activity |
GO_0015139 | Molecular function | alpha-ketoglutarate transmembrane transporter activity |
GO_0015141 | Molecular function | succinate transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SLC13A3 |
Protein name | HCG2018530, isoform CRA_c (Solute carrier family 13 member 3) Solute carrier family 13 member 3 Na(+)/dicarboxylate cotransporter 3 (NaDC-3) (hNaDC3) (Na(+)-coupled carboxylate transporter 3) (NaC3) (Sodium-dependent high-affinity dicarboxylate transporter 2) (Solute carrier family 13 member 3) (SLC13A3) |
Synonyms | NADC3 SDCT2 hCG_2018530 |
Description | FUNCTION: High-affinity sodium-dicarboxylate cotransporter that accepts a range of substrates with 4-6 carbon atoms, such as the citric acid cycle intermediates succinate and alpha-ketoglutarate (2-oxoglutarate), as well as other compounds including N-acetyl-L-aspartate . Transports the dicarboxylate into the cell with a probable stoichiometry of 3 Na(+) for 1 divalent dicarboxylate, rendering the process electrogenic . Can transport citrate in a Na(+)-dependent manner, recognizing the divalent form of citrate rather than the trivalent form which is normally found in blood . . |
Accessions | A0A0A0MRQ6 ENST00000417157.2 ENST00000468915.5 ENST00000290317.9 [Q8WWT9-6] ENST00000420568.5 X6RDV4 Q8WWT9 ENST00000372121.5 C9J7L4 ENST00000279027.9 [Q8WWT9-1] ENST00000413164.6 [Q8WWT9-5] H7C0C8 ENST00000472148.5 [Q8WWT9-3] C9J4A3 ENST00000495082.5 [Q8WWT9-6] ENST00000450298.5 |