SHISAL1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	3 studies	23% ± 5%	Explore
glutamatergic neuron	3 studies	24% ± 4%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	91%	3436.15	2406 / 2642	84%	14.14	593 / 705
prostate	89%	1087.16	217 / 245	77%	3.25	385 / 502
uterus	99%	8938.79	168 / 170	51%	4.28	234 / 459
bladder	95%	4082.95	20 / 21	33%	1.25	164 / 504
esophagus	63%	1040.67	908 / 1445	52%	3.18	96 / 183
intestine	80%	3644.77	774 / 966	34%	0.97	179 / 527
eye	0%	0	0 / 0	90%	9.72	72 / 80
stomach	33%	419.59	119 / 359	45%	2.30	130 / 286
pancreas	4%	22.84	14 / 328	74%	4.04	132 / 178
adrenal gland	9%	52.10	24 / 258	53%	7.52	123 / 230
breast	3%	18.84	16 / 459	56%	2.54	627 / 1118
ovary	26%	234.88	47 / 180	31%	1.19	134 / 430
skin	15%	73.78	274 / 1809	40%	3.08	190 / 472
tonsil	0%	0	0 / 0	51%	3.11	23 / 45
lung	3%	11.13	16 / 578	42%	2.38	484 / 1155
lymph node	0%	0	0 / 0	34%	0.70	10 / 29
thymus	11%	52.70	71 / 653	20%	1.55	122 / 605
adipose	26%	179.95	316 / 1204	0%	0	0 / 0
kidney	3%	23.55	3 / 89	20%	1.30	177 / 901
blood vessel	19%	120.38	250 / 1335	0%	0	0 / 0
heart	14%	72.70	123 / 861	0%	0	0 / 0
liver	0%	1.45	1 / 226	3%	0.14	11 / 406
muscle	0%	0.51	1 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1