Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 27% ± 12% | |
oligodendrocyte | 9 studies | 27% ± 10% | |
epithelial cell | 4 studies | 27% ± 10% | |
luminal cell of prostate epithelium | 4 studies | 27% ± 5% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 7% | |
glutamatergic neuron | 3 studies | 21% ± 4% |
Insufficient scRNA-seq data for expression of SH3BP4 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 5230.00 | 244 / 245 | 100% | 81.02 | 502 / 502 |
esophagus | 100% | 2454.34 | 1445 / 1445 | 99% | 70.05 | 181 / 183 |
intestine | 100% | 2223.31 | 966 / 966 | 99% | 54.62 | 521 / 527 |
stomach | 100% | 3872.56 | 359 / 359 | 98% | 57.08 | 279 / 286 |
lung | 100% | 3204.58 | 578 / 578 | 97% | 45.29 | 1126 / 1155 |
breast | 100% | 4402.50 | 459 / 459 | 97% | 72.70 | 1089 / 1118 |
ovary | 100% | 4086.63 | 180 / 180 | 94% | 44.14 | 405 / 430 |
pancreas | 100% | 6068.57 | 328 / 328 | 93% | 45.25 | 166 / 178 |
skin | 100% | 6384.34 | 1809 / 1809 | 93% | 53.06 | 439 / 472 |
liver | 100% | 2781.95 | 225 / 226 | 90% | 30.35 | 365 / 406 |
uterus | 100% | 2704.52 | 170 / 170 | 89% | 29.86 | 407 / 459 |
thymus | 100% | 3024.77 | 653 / 653 | 85% | 20.18 | 516 / 605 |
kidney | 100% | 3629.26 | 89 / 89 | 83% | 32.76 | 752 / 901 |
brain | 86% | 1348.06 | 2263 / 2642 | 97% | 34.32 | 686 / 705 |
bladder | 100% | 1708.38 | 21 / 21 | 77% | 27.29 | 390 / 504 |
adrenal gland | 100% | 2208.42 | 258 / 258 | 51% | 14.50 | 118 / 230 |
adipose | 100% | 3064.65 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 63.47 | 80 / 80 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.06 | 1 / 1 |
blood vessel | 100% | 2793.61 | 1334 / 1335 | 0% | 0 | 0 / 0 |
spleen | 97% | 1383.44 | 233 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 34.72 | 43 / 45 |
heart | 95% | 1482.57 | 816 / 861 | 0% | 0 | 0 / 0 |
muscle | 74% | 1325.32 | 591 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 3.88 | 4 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0034260 | Biological process | negative regulation of GTPase activity |
GO_0006897 | Biological process | endocytosis |
GO_0032007 | Biological process | negative regulation of TOR signaling |
GO_0061462 | Biological process | protein localization to lysosome |
GO_0010508 | Biological process | positive regulation of autophagy |
GO_0071230 | Biological process | cellular response to amino acid stimulus |
GO_0050790 | Biological process | regulation of catalytic activity |
GO_0043090 | Biological process | amino acid import |
GO_0030308 | Biological process | negative regulation of cell growth |
GO_0070062 | Cellular component | extracellular exosome |
GO_0030136 | Cellular component | clathrin-coated vesicle |
GO_0005737 | Cellular component | cytoplasm |
GO_0005905 | Cellular component | clathrin-coated pit |
GO_0005634 | Cellular component | nucleus |
GO_0005092 | Molecular function | GDP-dissociation inhibitor activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SH3BP4 |
Protein name | SH3 domain-binding protein 4 (EH-binding protein 10) (Transferrin receptor-trafficking protein) SH3 domain binding protein 4 |
Synonyms | BOG25 EHB10 TTP |
Description | FUNCTION: May function in transferrin receptor internalization at the plasma membrane through a cargo-specific control of clathrin-mediated endocytosis. Alternatively, may act as a negative regulator of the amino acid-induced TOR signaling by inhibiting the formation of active Rag GTPase complexes. Preferentially binds inactive Rag GTPase complexes and prevents their interaction with the mTORC1 complex inhibiting its relocalization to lysosomes and its activation. Thereby, may indirectly regulate cell growth, proliferation and autophagy. . |
Accessions | ENST00000444916.5 ENST00000344528.8 [Q9P0V3-1] Q9P0V3 C9JRG1 C9JWW6 ENST00000392011.7 [Q9P0V3-1] C9JF25 C9JED2 ENST00000409212.5 [Q9P0V3-1] ENST00000446904.5 ENST00000416021.5 ENST00000454947.1 |