SFTA2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
type I pneumocyte	9 studies	67% ± 24%	Explore
type II pneumocyte	9 studies	78% ± 25%	Explore
epithelial cell	6 studies	37% ± 25%	Explore
club cell	4 studies	40% ± 27%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	3 studies	25% ± 13%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
pancreas	95%	40.95	311 / 328	80%	59.92	142 / 178
lung	100%	3451.48	577 / 578	72%	189.87	827 / 1155
stomach	73%	86.54	262 / 359	46%	16.61	131 / 286
thymus	84%	37.64	547 / 653	25%	3.15	151 / 605
kidney	89%	59.93	79 / 89	5%	1.19	45 / 901
esophagus	45%	263.19	647 / 1445	33%	11.18	60 / 183
intestine	4%	0.81	43 / 966	41%	17.74	215 / 527
uterus	24%	6.62	41 / 170	18%	18.50	81 / 459
bladder	10%	1.43	2 / 21	21%	27.02	107 / 504
muscle	28%	6.60	225 / 803	0%	0	0 / 0
brain	19%	2.58	511 / 2642	0%	0	0 / 705
prostate	18%	2.15	44 / 245	0%	0	0 / 502
liver	12%	2.15	26 / 226	4%	0.95	15 / 406
ovary	6%	4.27	10 / 180	10%	3.86	41 / 430
adipose	13%	2.10	157 / 1204	0%	0	0 / 0
breast	12%	1.94	53 / 459	1%	0.09	10 / 1118
adrenal gland	9%	1.04	23 / 258	0%	0	0 / 230
spleen	7%	0.89	18 / 241	0%	0	0 / 0
peripheral blood	4%	1.32	36 / 929	0%	0	0 / 0
skin	2%	0.59	40 / 1809	1%	0.31	7 / 472
blood vessel	3%	0.77	38 / 1335	0%	0	0 / 0
heart	3%	0.41	24 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	2%	0.18	1 / 45
eye	0%	0	0 / 0	1%	0.08	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1