Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 15 studies | 44% ± 17% | |
basal cell | 12 studies | 36% ± 14% | |
goblet cell | 10 studies | 28% ± 11% | |
ciliated cell | 7 studies | 29% ± 16% | |
respiratory goblet cell | 7 studies | 36% ± 15% | |
secretory cell | 7 studies | 45% ± 12% | |
enterocyte | 7 studies | 32% ± 13% | |
club cell | 6 studies | 31% ± 7% | |
duct epithelial cell | 4 studies | 31% ± 16% | |
squamous epithelial cell | 4 studies | 50% ± 21% | |
abnormal cell | 4 studies | 25% ± 8% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 30% ± 10% | |
kidney loop of Henle epithelial cell | 3 studies | 36% ± 15% | |
placental villous trophoblast | 3 studies | 51% ± 20% | |
serous secreting cell | 3 studies | 24% ± 2% | |
luminal cell of prostate epithelium | 3 studies | 29% ± 9% | |
transit amplifying cell | 3 studies | 26% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 12420.92 | 226 / 226 | 97% | 225.09 | 395 / 406 |
thymus | 99% | 2799.21 | 649 / 653 | 97% | 161.13 | 584 / 605 |
kidney | 100% | 9184.24 | 89 / 89 | 95% | 184.80 | 855 / 901 |
prostate | 91% | 5915.23 | 224 / 245 | 99% | 200.04 | 497 / 502 |
pancreas | 93% | 2180.72 | 305 / 328 | 92% | 274.01 | 163 / 178 |
lung | 89% | 2162.12 | 517 / 578 | 93% | 204.16 | 1071 / 1155 |
stomach | 76% | 4980.10 | 272 / 359 | 96% | 259.45 | 274 / 286 |
breast | 69% | 3644.51 | 317 / 459 | 95% | 218.87 | 1063 / 1118 |
bladder | 52% | 6085.43 | 11 / 21 | 94% | 423.79 | 475 / 504 |
intestine | 48% | 5755.40 | 460 / 966 | 98% | 251.47 | 515 / 527 |
esophagus | 40% | 3854.32 | 576 / 1445 | 99% | 335.89 | 182 / 183 |
skin | 100% | 6385.15 | 1808 / 1809 | 36% | 33.08 | 168 / 472 |
adrenal gland | 96% | 2211.51 | 248 / 258 | 11% | 14.27 | 26 / 230 |
ureter | 0% | 0 | 0 / 0 | 100% | 563.69 | 1 / 1 |
muscle | 99% | 4437.28 | 798 / 803 | 0% | 0 | 0 / 0 |
uterus | 11% | 329.20 | 18 / 170 | 88% | 255.14 | 406 / 459 |
ovary | 1% | 7.94 | 1 / 180 | 82% | 118.39 | 352 / 430 |
tonsil | 0% | 0 | 0 / 0 | 78% | 130.25 | 35 / 45 |
peripheral blood | 40% | 749.83 | 372 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 24% | 13.43 | 19 / 80 |
adipose | 19% | 247.72 | 231 / 1204 | 0% | 0 | 0 / 0 |
spleen | 6% | 63.54 | 14 / 241 | 0% | 0 | 0 / 0 |
brain | 1% | 6.16 | 14 / 2642 | 4% | 2.47 | 26 / 705 |
blood vessel | 4% | 42.98 | 48 / 1335 | 0% | 0 | 0 / 0 |
heart | 2% | 24.19 | 15 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016020 | Cellular component | membrane |
GO_0070062 | Cellular component | extracellular exosome |
Gene name | SERINC2 |
Protein name | SERINC2 protein Serine incorporator 2 (Tumor differentially expressed protein 2-like) |
Synonyms | TDE2L UNQ263/PRO300 FKSG84 |
Description | |
Accessions | ENST00000373709.8 [Q96SA4-1] Q96AI1 Q96SA4 ENST00000536384.2 [Q96SA4-2] ENST00000536859.5 [Q96SA4-3] ENST00000373710.5 [Q96SA4-4] Q96IM8 |