Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 14 studies | 30% ± 13% | |
astrocyte | 13 studies | 33% ± 17% | |
glutamatergic neuron | 10 studies | 54% ± 20% | |
oligodendrocyte | 10 studies | 31% ± 13% | |
GABAergic neuron | 9 studies | 49% ± 18% | |
oligodendrocyte precursor cell | 9 studies | 36% ± 18% | |
endothelial cell | 7 studies | 34% ± 18% | |
interneuron | 6 studies | 45% ± 23% | |
retina horizontal cell | 6 studies | 39% ± 17% | |
retinal cone cell | 6 studies | 72% ± 20% | |
neuron | 5 studies | 45% ± 19% | |
microglial cell | 5 studies | 34% ± 17% | |
fibroblast | 5 studies | 34% ± 16% | |
retinal ganglion cell | 4 studies | 42% ± 25% | |
type I pneumocyte | 4 studies | 19% ± 3% | |
glial cell | 3 studies | 27% ± 11% | |
granule cell | 3 studies | 33% ± 13% | |
GABAergic amacrine cell | 3 studies | 29% ± 7% | |
mesothelial cell | 3 studies | 40% ± 5% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 23% ± 2% | |
kidney loop of Henle epithelial cell | 3 studies | 27% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 14 studies | 39% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 2095.61 | 2616 / 2642 | 100% | 26.81 | 702 / 705 |
ovary | 100% | 3026.71 | 180 / 180 | 86% | 6.29 | 368 / 430 |
thymus | 100% | 1657.02 | 652 / 653 | 75% | 5.91 | 451 / 605 |
kidney | 100% | 1361.82 | 89 / 89 | 58% | 3.90 | 526 / 901 |
breast | 99% | 1373.86 | 456 / 459 | 52% | 4.39 | 576 / 1118 |
pancreas | 99% | 1676.41 | 326 / 328 | 50% | 1.89 | 89 / 178 |
lung | 99% | 1284.64 | 570 / 578 | 51% | 5.44 | 585 / 1155 |
intestine | 100% | 2075.69 | 964 / 966 | 43% | 2.00 | 225 / 527 |
skin | 67% | 510.88 | 1211 / 1809 | 68% | 7.36 | 323 / 472 |
prostate | 98% | 1282.49 | 240 / 245 | 29% | 1.04 | 146 / 502 |
esophagus | 71% | 583.09 | 1027 / 1445 | 50% | 4.76 | 91 / 183 |
stomach | 64% | 638.21 | 230 / 359 | 53% | 2.82 | 153 / 286 |
bladder | 90% | 825.05 | 19 / 21 | 21% | 1.18 | 105 / 504 |
uterus | 79% | 544.95 | 134 / 170 | 30% | 2.32 | 136 / 459 |
adipose | 99% | 1258.66 | 1189 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 98% | 1050.60 | 1302 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 27% | 121.93 | 70 / 258 | 70% | 5.83 | 160 / 230 |
heart | 90% | 888.74 | 779 / 861 | 0% | 0 | 0 / 0 |
muscle | 63% | 621.85 | 503 / 803 | 0% | 0 | 0 / 0 |
spleen | 62% | 312.87 | 149 / 241 | 0% | 0 | 0 / 0 |
liver | 48% | 248.41 | 109 / 226 | 13% | 0.56 | 51 / 406 |
eye | 0% | 0 | 0 / 0 | 60% | 4.07 | 48 / 80 |
tonsil | 0% | 0 | 0 / 0 | 38% | 2.70 | 17 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0021591 | Biological process | ventricular system development |
GO_0071526 | Biological process | semaphorin-plexin signaling pathway |
GO_0014909 | Biological process | smooth muscle cell migration |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0014912 | Biological process | negative regulation of smooth muscle cell migration |
GO_0001755 | Biological process | neural crest cell migration |
GO_0014911 | Biological process | positive regulation of smooth muscle cell migration |
GO_0007411 | Biological process | axon guidance |
GO_0050919 | Biological process | negative chemotaxis |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005886 | Cellular component | plasma membrane |
GO_0045499 | Molecular function | chemorepellent activity |
GO_0030215 | Molecular function | semaphorin receptor binding |
Gene name | SEMA6D |
Protein name | Semaphorin 6D Semaphorin-6D Semaphorin-6D isoform 8 |
Synonyms | KIAA1479 |
Description | FUNCTION: Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. May be a stop signal for the DRG neurons in their target areas, and possibly also for other neurons. May also be involved in the maintenance and remodeling of neuronal connections. |
Accessions | ENST00000558816.5 [Q8NFY4-8] ENST00000358066.8 [Q8NFY4-2] ENST00000558014.5 [Q8NFY4-2] ENST00000354744.8 [Q8NFY4-4] ENST00000316364.9 [Q8NFY4-1] ENST00000536845.7 [Q8NFY4-1] ENST00000561133.5 H0YMV0 A0A185QE25 ENST00000559184.5 H0YMP7 ENST00000389425.7 [Q8NFY4-7] H0YMA6 Q8NFY4 H0YL82 ENST00000559064.1 ENST00000560006.1 H0YM97 ENST00000355997.7 [Q8NFY4-8] ENST00000559196.1 ENST00000389428.7 [Q8NFY4-3] |