Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 25% ± 6% | |
glutamatergic neuron | 4 studies | 28% ± 11% | |
endothelial cell | 3 studies | 22% ± 5% | |
GABAergic neuron | 3 studies | 26% ± 8% | |
oligodendrocyte | 3 studies | 18% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 21% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3775.70 | 1443 / 1445 | 100% | 43.68 | 183 / 183 |
intestine | 100% | 3311.01 | 965 / 966 | 99% | 31.24 | 521 / 527 |
lung | 100% | 3355.12 | 578 / 578 | 98% | 35.48 | 1136 / 1155 |
stomach | 100% | 2855.79 | 358 / 359 | 99% | 36.91 | 282 / 286 |
ovary | 100% | 3227.78 | 180 / 180 | 96% | 33.99 | 414 / 430 |
breast | 100% | 3172.59 | 459 / 459 | 96% | 42.22 | 1072 / 1118 |
skin | 100% | 3571.02 | 1806 / 1809 | 96% | 34.99 | 452 / 472 |
pancreas | 100% | 2253.05 | 327 / 328 | 94% | 23.45 | 168 / 178 |
prostate | 100% | 2954.48 | 244 / 245 | 92% | 36.50 | 460 / 502 |
kidney | 100% | 2220.28 | 89 / 89 | 90% | 24.94 | 815 / 901 |
bladder | 100% | 3163.90 | 21 / 21 | 90% | 24.64 | 455 / 504 |
brain | 92% | 1658.57 | 2441 / 2642 | 97% | 29.03 | 681 / 705 |
thymus | 100% | 3670.90 | 652 / 653 | 89% | 27.33 | 537 / 605 |
uterus | 100% | 3738.08 | 170 / 170 | 83% | 22.11 | 383 / 459 |
adrenal gland | 100% | 3923.35 | 258 / 258 | 82% | 21.34 | 188 / 230 |
liver | 97% | 1787.38 | 220 / 226 | 75% | 15.73 | 305 / 406 |
adipose | 100% | 2915.36 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 3478.56 | 241 / 241 | 0% | 0 | 0 / 0 |
muscle | 100% | 2879.01 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3299.30 | 1333 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 22.62 | 78 / 80 |
heart | 94% | 1963.60 | 811 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 28.75 | 42 / 45 |
peripheral blood | 93% | 2958.22 | 861 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 59% | 24.98 | 17 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0001701 | Biological process | in utero embryonic development |
GO_0090110 | Biological process | COPII-coated vesicle cargo loading |
GO_0012507 | Cellular component | ER to Golgi transport vesicle membrane |
GO_0005829 | Cellular component | cytosol |
GO_0030127 | Cellular component | COPII vesicle coat |
GO_0070971 | Cellular component | endoplasmic reticulum exit site |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0000149 | Molecular function | SNARE binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | SEC24C |
Protein name | SEC24 homolog C, COPII coat complex component (SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b) SEC24 homolog C, COPII coat complex component Protein transport protein Sec24C (SEC24-related protein C) |
Synonyms | KIAA0079 hCG_19035 |
Description | FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex . Plays a central role in cargo selection within the COPII complex and together with SEC24D may have a different specificity compared to SEC24A and SEC24B . May more specifically package GPI-anchored proteins through the cargo receptor TMED10 . May also be specific for IxM motif-containing cargos like the SNAREs GOSR2 and STX5 . . |
Accessions | G5EA31 ENST00000345254.9 [P53992-1] ENST00000634508.1 ENST00000339365.2 [P53992-1] ENST00000635550.1 A0A0U1RR58 A0A0U1RR49 ENST00000465076.5 P53992 |