Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 24% ± 9% | |
ciliated cell | 6 studies | 21% ± 6% | |
epithelial cell | 5 studies | 33% ± 14% | |
goblet cell | 5 studies | 39% ± 21% | |
classical monocyte | 3 studies | 19% ± 4% | |
myeloid cell | 3 studies | 18% ± 1% | |
basal cell | 3 studies | 23% ± 6% | |
GABAergic neuron | 3 studies | 29% ± 10% | |
astrocyte | 3 studies | 19% ± 4% | |
glutamatergic neuron | 3 studies | 42% ± 16% | |
transit amplifying cell | 3 studies | 21% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 24% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 8179.78 | 459 / 459 | 100% | 97.72 | 1118 / 1118 |
esophagus | 100% | 7127.31 | 1445 / 1445 | 100% | 81.70 | 183 / 183 |
prostate | 100% | 9963.33 | 245 / 245 | 100% | 118.24 | 502 / 502 |
bladder | 100% | 7010.43 | 21 / 21 | 100% | 43.74 | 503 / 504 |
intestine | 100% | 7684.53 | 966 / 966 | 100% | 57.40 | 525 / 527 |
skin | 100% | 8994.05 | 1809 / 1809 | 100% | 46.88 | 470 / 472 |
uterus | 100% | 7826.44 | 170 / 170 | 100% | 44.00 | 457 / 459 |
pancreas | 100% | 6590.64 | 328 / 328 | 99% | 45.33 | 177 / 178 |
stomach | 100% | 9104.67 | 359 / 359 | 99% | 61.62 | 284 / 286 |
thymus | 100% | 7997.28 | 653 / 653 | 99% | 44.35 | 600 / 605 |
lung | 100% | 9071.85 | 578 / 578 | 99% | 52.27 | 1139 / 1155 |
liver | 100% | 9775.84 | 226 / 226 | 99% | 34.82 | 400 / 406 |
brain | 98% | 4924.45 | 2602 / 2642 | 99% | 42.03 | 700 / 705 |
kidney | 100% | 5872.84 | 89 / 89 | 97% | 33.03 | 875 / 901 |
adrenal gland | 100% | 7803.65 | 258 / 258 | 97% | 38.86 | 222 / 230 |
ovary | 100% | 6943.03 | 180 / 180 | 96% | 40.25 | 413 / 430 |
adipose | 100% | 7213.92 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 7258.20 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 47.73 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 44.58 | 29 / 29 |
muscle | 100% | 5462.49 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 9328.51 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 45.67 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.91 | 1 / 1 |
heart | 99% | 4141.25 | 853 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 5151.79 | 892 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0072659 | Biological process | protein localization to plasma membrane |
GO_0032527 | Biological process | protein exit from endoplasmic reticulum |
GO_0034976 | Biological process | response to endoplasmic reticulum stress |
GO_0003400 | Biological process | regulation of COPII vesicle coating |
GO_0007029 | Biological process | endoplasmic reticulum organization |
GO_0070973 | Biological process | protein localization to endoplasmic reticulum exit site |
GO_0007030 | Biological process | Golgi organization |
GO_0050821 | Biological process | protein stabilization |
GO_0006893 | Biological process | Golgi to plasma membrane transport |
GO_0021762 | Biological process | substantia nigra development |
GO_0006914 | Biological process | autophagy |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0048208 | Biological process | COPII vesicle coating |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0070971 | Cellular component | endoplasmic reticulum exit site |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0012507 | Cellular component | ER to Golgi transport vesicle membrane |
GO_0031090 | Cellular component | organelle membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SEC16A |
Protein name | SEC16 homolog A, endoplasmic reticulum export factor (cDNA FLJ37437 fis, clone BRAWH2003025) Protein transport protein sec16 SEC16A protein Protein transport protein Sec16A (SEC16 homolog A) (p250) SEC16 homolog A, endoplasmic reticulum export factor Protein transport protein Sec16A |
Synonyms | KIAA0310 SEC16L SEC16 |
Description | FUNCTION: Acts as a molecular scaffold that plays a key role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining an ERES. Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus . Mediates the recruitment of MIA3/TANGO to ERES . Regulates both conventional (ER/Golgi-dependent) and GORASP2-mediated unconventional (ER/Golgi-independent) trafficking of CFTR to cell membrane . Positively regulates the protein stability of E3 ubiquitin-protein ligases RNF152 and RNF183 and the ER localization of RNF183 . Acts as a RAB10 effector in the regulation of insulin-induced SLC2A4/GLUT4 glucose transporter-enriched vesicles delivery to the cell membrane in adipocytes (By similarity). . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . FUNCTION: Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. . |
Accessions | A0PJ75 O15027 A4QN18 X6RGP5 ENST00000313084.9 ENST00000690691.1 ENST00000689049.1 ENST00000684901.1 [O15027-1] ENST00000290037.10 F1T0I1 ENST00000371706.8 A0A8I5KPG1 A0A0C4DH09 A0A3F2YNX0 ENST00000313050.11 [O15027-1] A0A8I5KQ88 A4QN19 G1UI25 Q8N9G1 ENST00000453963.5 Q9BV84 ENST00000277537.10 ENST00000431893.3 A0A3F2YNZ0 |