SCHIP1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	3 studies	32% ± 10%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	29% ± 17%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	249.95	2641 / 2642	97%	3.38	686 / 705
muscle	100%	505.89	803 / 803	0%	0	0 / 0
heart	94%	236.59	806 / 861	0%	0	0 / 0
esophagus	52%	43.12	755 / 1445	21%	0.35	39 / 183
intestine	64%	54.08	617 / 966	1%	0.02	6 / 527
lung	49%	25.67	281 / 578	11%	0.21	125 / 1155
uterus	50%	25.06	85 / 170	6%	0.12	29 / 459
kidney	19%	7.09	17 / 89	27%	0.58	240 / 901
stomach	33%	35.66	119 / 359	3%	0.06	8 / 286
prostate	32%	16.71	79 / 245	1%	0.02	5 / 502
spleen	32%	12.99	77 / 241	0%	0	0 / 0
breast	26%	11.70	118 / 459	3%	0.07	36 / 1118
adipose	28%	13.21	335 / 1204	0%	0	0 / 0
adrenal gland	2%	0.66	4 / 258	22%	0.30	50 / 230
blood vessel	17%	8.05	230 / 1335	0%	0	0 / 0
bladder	10%	4.19	2 / 21	3%	0.08	14 / 504
thymus	7%	2.77	46 / 653	1%	0.02	5 / 605
peripheral blood	6%	7.59	60 / 929	0%	0	0 / 0
skin	0%	0.22	6 / 1809	6%	0.10	26 / 472
ovary	3%	1.33	5 / 180	2%	0.03	9 / 430
tonsil	0%	0	0 / 0	2%	0.03	1 / 45
pancreas	0%	0	0 / 328	2%	0.05	3 / 178
liver	0%	0	0 / 226	0%	0.00	1 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1