Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| astrocyte | 21 studies | 55% ± 15% | |
| oligodendrocyte | 17 studies | 68% ± 18% | |
| oligodendrocyte precursor cell | 16 studies | 80% ± 16% | |
| glutamatergic neuron | 12 studies | 46% ± 21% | |
| GABAergic neuron | 10 studies | 48% ± 20% | |
| type I pneumocyte | 8 studies | 34% ± 11% | |
| endothelial cell | 7 studies | 32% ± 14% | |
| interneuron | 7 studies | 45% ± 15% | |
| neuron | 6 studies | 40% ± 13% | |
| retinal ganglion cell | 6 studies | 50% ± 24% | |
| amacrine cell | 6 studies | 35% ± 14% | |
| retina horizontal cell | 6 studies | 36% ± 11% | |
| Mueller cell | 6 studies | 37% ± 11% | |
| retinal bipolar neuron | 5 studies | 24% ± 7% | |
| OFF-bipolar cell | 5 studies | 34% ± 8% | |
| kidney loop of Henle epithelial cell | 5 studies | 27% ± 6% | |
| GABAergic amacrine cell | 4 studies | 34% ± 13% | |
| epithelial cell | 4 studies | 42% ± 16% | |
| ON-bipolar cell | 4 studies | 31% ± 7% | |
| macrophage | 3 studies | 30% ± 7% | |
| differentiation-committed oligodendrocyte precursor | 3 studies | 77% ± 9% | |
| GABAergic interneuron | 3 studies | 38% ± 3% | |
| glial cell | 3 studies | 29% ± 10% | |
| granule cell | 3 studies | 24% ± 2% | |
| microglial cell | 3 studies | 29% ± 6% | |
| retinal cone cell | 3 studies | 30% ± 7% | |
| ciliated cell | 3 studies | 24% ± 5% | |
| pancreatic ductal cell | 3 studies | 48% ± 22% | |
| neural progenitor cell | 3 studies | 30% ± 5% | |
| ependymal cell | 3 studies | 37% ± 22% | |
| club cell | 3 studies | 27% ± 8% | |
| basal cell | 3 studies | 39% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 100% | 25257.32 | 2641 / 2642 | 100% | 883.54 | 703 / 705 |
| ovary | 99% | 9514.74 | 179 / 180 | 80% | 46.69 | 343 / 430 |
| adrenal gland | 100% | 18489.29 | 257 / 258 | 78% | 96.97 | 179 / 230 |
| thymus | 64% | 2036.15 | 419 / 653 | 97% | 123.49 | 585 / 605 |
| pancreas | 36% | 1024.46 | 117 / 328 | 68% | 24.85 | 121 / 178 |
| kidney | 37% | 1063.26 | 33 / 89 | 46% | 35.18 | 415 / 901 |
| tonsil | 0% | 0 | 0 / 0 | 78% | 36.35 | 35 / 45 |
| uterus | 9% | 213.94 | 16 / 170 | 67% | 30.11 | 309 / 459 |
| prostate | 15% | 377.13 | 36 / 245 | 51% | 14.55 | 254 / 502 |
| lung | 10% | 243.43 | 55 / 578 | 45% | 18.17 | 521 / 1155 |
| esophagus | 8% | 206.28 | 116 / 1445 | 34% | 12.97 | 62 / 183 |
| intestine | 24% | 645.14 | 235 / 966 | 14% | 4.16 | 72 / 527 |
| breast | 5% | 146.31 | 24 / 459 | 28% | 11.30 | 308 / 1118 |
| bladder | 5% | 150.57 | 1 / 21 | 21% | 7.63 | 108 / 504 |
| stomach | 5% | 118.69 | 18 / 359 | 17% | 5.01 | 48 / 286 |
| skin | 4% | 92.26 | 67 / 1809 | 17% | 6.50 | 79 / 472 |
| liver | 0% | 0 | 0 / 226 | 8% | 9.48 | 34 / 406 |
| eye | 0% | 0 | 0 / 0 | 8% | 3.52 | 6 / 80 |
| adipose | 3% | 91.71 | 41 / 1204 | 0% | 0 | 0 / 0 |
| heart | 3% | 64.21 | 22 / 861 | 0% | 0 | 0 / 0 |
| blood vessel | 3% | 66.98 | 34 / 1335 | 0% | 0 | 0 / 0 |
| peripheral blood | 0% | 2.48 | 1 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0006636 | Biological process | unsaturated fatty acid biosynthetic process |
| GO_0005789 | Cellular component | endoplasmic reticulum membrane |
| GO_0016491 | Molecular function | oxidoreductase activity |
| GO_0046872 | Molecular function | metal ion binding |
| GO_0004768 | Molecular function | stearoyl-CoA 9-desaturase activity |
| Gene name | SCD5 |
| Protein name | SCD5 protein SCD5 protein (Stearoyl-CoA desaturase 5, isoform CRA_d) Stearoyl-CoA desaturase 5 (EC 1.14.19.1) (Acyl-CoA-desaturase 4) (HSCD5) (Stearoyl-CoA 9-desaturase) (Stearoyl-CoA desaturase 2) |
| Synonyms | SCD4 SCD2 hCG_1782054 ACOD4 |
| Description | FUNCTION: Stearoyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. Catalyzes the insertion of a cis double bond at the delta-9 position into fatty acyl-CoA substrates including palmitoyl-CoA and stearoyl-CoA . Gives rise to a mixture of 16:1 and 18:1 unsaturated fatty acids . Involved in neuronal cell proliferation and differentiation through down-regulation of EGFR/AKT/MAPK and Wnt signaling pathways . . |
| Accessions | ENST00000319540.9 [Q86SK9-1] Q86UC8 Q86SK9 ENST00000273908.4 [Q86SK9-2] Q9BSN4 |