RPAP3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	4 studies	29% ± 13%	Explore
non-classical monocyte	3 studies	19% ± 4%	Explore
ciliated cell	3 studies	28% ± 8%	Explore
GABAergic neuron	3 studies	33% ± 10%	Explore
glutamatergic neuron	3 studies	44% ± 9%	Explore
dendritic cell	3 studies	26% ± 5%	Explore
plasmacytoid dendritic cell	3 studies	23% ± 8%	Explore
astrocyte	3 studies	26% ± 5%	Explore
oligodendrocyte	3 studies	18% ± 1%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	30% ± 4%	Explore
liver	3 studies	20% ± 2%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1220.86	1445 / 1445	100%	21.87	183 / 183
ovary	100%	2243.71	180 / 180	100%	17.24	430 / 430
breast	100%	1270.66	459 / 459	100%	26.06	1117 / 1118
lung	100%	1031.03	577 / 578	100%	21.41	1155 / 1155
uterus	100%	1510.69	170 / 170	100%	22.71	458 / 459
thymus	100%	1210.09	653 / 653	99%	18.11	601 / 605
brain	99%	1123.92	2626 / 2642	100%	16.25	704 / 705
prostate	100%	1229.05	245 / 245	99%	17.64	498 / 502
bladder	100%	1406.90	21 / 21	99%	20.71	497 / 504
stomach	100%	934.52	359 / 359	98%	19.37	281 / 286
intestine	100%	1499.93	966 / 966	98%	19.05	515 / 527
pancreas	99%	635.50	324 / 328	99%	15.87	176 / 178
adrenal gland	100%	1132.72	258 / 258	97%	16.21	224 / 230
liver	100%	652.46	225 / 226	97%	9.89	392 / 406
kidney	100%	901.71	89 / 89	96%	11.96	865 / 901
skin	100%	1291.80	1805 / 1809	93%	17.78	437 / 472
blood vessel	100%	1161.71	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	30.31	29 / 29
muscle	100%	1709.72	803 / 803	0%	0	0 / 0
spleen	100%	1431.28	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	19.71	45 / 45
ureter	0%	0	0 / 0	100%	7.39	1 / 1
adipose	100%	1129.21	1203 / 1204	0%	0	0 / 0
heart	95%	885.47	821 / 861	0%	0	0 / 0
peripheral blood	84%	921.87	778 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	54%	5.38	43 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0