RNF175 report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	8 studies	42% ± 27%	Explore
GABAergic neuron	6 studies	49% ± 23%	Explore
oligodendrocyte precursor cell	4 studies	24% ± 6%	Explore
interneuron	4 studies	50% ± 25%	Explore
GABAergic interneuron	3 studies	22% ± 2%	Explore
neuron	3 studies	21% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	37% ± 23%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	97%	1029.44	2568 / 2642	90%	5.36	634 / 705
lung	81%	180.96	471 / 578	54%	1.37	622 / 1155
prostate	93%	267.59	227 / 245	31%	0.50	155 / 502
adrenal gland	27%	45.09	69 / 258	67%	7.56	154 / 230
breast	54%	82.02	246 / 459	39%	0.82	441 / 1118
spleen	93%	339.12	224 / 241	0%	0	0 / 0
skin	30%	42.13	538 / 1809	51%	7.60	241 / 472
peripheral blood	78%	676.68	720 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	62%	1.04	18 / 29
tonsil	0%	0	0 / 0	56%	1.69	25 / 45
adipose	54%	94.39	656 / 1204	0%	0	0 / 0
uterus	8%	17.41	14 / 170	45%	1.83	205 / 459
heart	50%	158.85	434 / 861	0%	0	0 / 0
kidney	7%	9.20	6 / 89	42%	0.95	377 / 901
esophagus	12%	14.25	169 / 1445	30%	0.91	54 / 183
thymus	8%	10.37	53 / 653	30%	0.60	183 / 605
pancreas	1%	1.36	4 / 328	37%	0.62	66 / 178
bladder	10%	11.86	2 / 21	23%	0.49	114 / 504
intestine	27%	32.79	262 / 966	5%	0.11	24 / 527
blood vessel	25%	36.77	329 / 1335	0%	0	0 / 0
ovary	1%	1.07	2 / 180	13%	0.30	58 / 430
stomach	8%	9.77	28 / 359	6%	0.16	18 / 286
liver	5%	8.83	12 / 226	4%	0.13	16 / 406
eye	0%	0	0 / 0	1%	0.03	1 / 80
muscle	1%	0.74	5 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1