Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 4 studies | 23% ± 5% | |
glutamatergic neuron | 4 studies | 37% ± 14% | |
epithelial cell | 3 studies | 21% ± 2% | |
GABAergic neuron | 3 studies | 38% ± 6% | |
oligodendrocyte | 3 studies | 18% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 31% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3799.70 | 2642 / 2642 | 100% | 48.07 | 705 / 705 |
esophagus | 100% | 2660.43 | 1445 / 1445 | 100% | 14.02 | 183 / 183 |
prostate | 100% | 2501.98 | 245 / 245 | 100% | 16.30 | 501 / 502 |
thymus | 100% | 3573.86 | 653 / 653 | 100% | 21.53 | 603 / 605 |
lung | 100% | 2423.07 | 577 / 578 | 100% | 13.77 | 1153 / 1155 |
stomach | 100% | 1984.13 | 359 / 359 | 100% | 11.85 | 285 / 286 |
breast | 100% | 2374.64 | 459 / 459 | 100% | 19.51 | 1114 / 1118 |
intestine | 100% | 2798.00 | 966 / 966 | 100% | 10.55 | 525 / 527 |
bladder | 100% | 2922.86 | 21 / 21 | 100% | 13.25 | 502 / 504 |
uterus | 100% | 3128.74 | 170 / 170 | 99% | 13.27 | 456 / 459 |
ovary | 100% | 3266.93 | 180 / 180 | 99% | 10.54 | 426 / 430 |
skin | 100% | 2674.26 | 1808 / 1809 | 99% | 16.46 | 465 / 472 |
pancreas | 99% | 1049.55 | 326 / 328 | 99% | 11.38 | 176 / 178 |
liver | 100% | 1416.02 | 226 / 226 | 97% | 7.63 | 395 / 406 |
kidney | 100% | 1437.64 | 89 / 89 | 96% | 10.02 | 866 / 901 |
adrenal gland | 100% | 2133.25 | 258 / 258 | 94% | 11.30 | 217 / 230 |
adipose | 100% | 2403.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3360.49 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 8.57 | 29 / 29 |
muscle | 100% | 2179.14 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2482.94 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.85 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.24 | 1 / 1 |
heart | 98% | 1573.28 | 846 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 1223.22 | 841 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 89% | 7.84 | 71 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034498 | Biological process | early endosome to Golgi transport |
GO_0015031 | Biological process | protein transport |
GO_0016197 | Biological process | endosomal transport |
GO_0090160 | Biological process | Golgi to lysosome transport |
GO_1903358 | Biological process | regulation of Golgi organization |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0010008 | Cellular component | endosome membrane |
GO_0031901 | Cellular component | early endosome membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005768 | Cellular component | endosome |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0031267 | Molecular function | small GTPase binding |
Gene name | RBSN |
Protein name | Rabenosyn-5 (110 kDa protein) (FYVE finger-containing Rab5 effector protein rabenosyn-5) (RAB effector RBSN) (Zinc finger FYVE domain-containing protein 20) Rabenosyn, RAB effector |
Synonyms | ZFYVE20 |
Description | FUNCTION: Rab4/Rab5 effector protein acting in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Required for endosome fusion either homotypically or with clathrin coated vesicles. Plays a role in the lysosomal trafficking of CTSD/cathepsin D from the Golgi to lysosomes. Also promotes the recycling of transferrin directly from early endosomes to the plasma membrane. Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate (PtdInsP3) . Plays a role in the recycling of transferrin receptor to the plasma membrane . . |
Accessions | C9JZZ1 ENST00000449050.5 H7C204 ENST00000253699.7 [Q9H1K0-1] ENST00000426541.1 Q9H1K0 ENST00000441057.5 D6RD50 F8WE50 ENST00000507357.1 ENST00000476527.6 [Q9H1K0-1] |