Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 24% ± 9% | |
astrocyte | 7 studies | 33% ± 13% | |
epithelial cell | 6 studies | 27% ± 11% | |
adipocyte | 6 studies | 24% ± 2% | |
oligodendrocyte precursor cell | 5 studies | 24% ± 10% | |
oligodendrocyte | 5 studies | 24% ± 6% | |
basal cell | 4 studies | 19% ± 6% | |
GABAergic neuron | 4 studies | 32% ± 12% | |
microglial cell | 3 studies | 18% ± 2% | |
cardiac muscle cell | 3 studies | 20% ± 3% | |
glutamatergic neuron | 3 studies | 42% ± 9% | |
dendritic cell | 3 studies | 19% ± 1% | |
transit amplifying cell | 3 studies | 24% ± 8% | |
interneuron | 3 studies | 38% ± 21% | |
neuron | 3 studies | 23% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2158.70 | 1445 / 1445 | 100% | 8.04 | 183 / 183 |
breast | 100% | 3165.07 | 459 / 459 | 100% | 8.34 | 1117 / 1118 |
bladder | 100% | 2277.86 | 21 / 21 | 100% | 7.98 | 503 / 504 |
uterus | 100% | 3266.04 | 170 / 170 | 100% | 8.15 | 458 / 459 |
intestine | 100% | 2297.26 | 966 / 966 | 100% | 8.00 | 525 / 527 |
brain | 100% | 1739.11 | 2631 / 2642 | 100% | 10.17 | 704 / 705 |
lung | 100% | 2170.62 | 578 / 578 | 99% | 8.16 | 1148 / 1155 |
skin | 100% | 2918.01 | 1809 / 1809 | 99% | 11.49 | 469 / 472 |
prostate | 100% | 2517.82 | 245 / 245 | 99% | 5.47 | 497 / 502 |
pancreas | 100% | 1548.28 | 328 / 328 | 99% | 5.60 | 176 / 178 |
thymus | 100% | 2840.07 | 653 / 653 | 99% | 5.66 | 598 / 605 |
ovary | 100% | 3356.17 | 180 / 180 | 99% | 6.76 | 425 / 430 |
stomach | 100% | 2027.59 | 359 / 359 | 99% | 7.92 | 282 / 286 |
kidney | 100% | 1758.76 | 89 / 89 | 96% | 5.73 | 867 / 901 |
adrenal gland | 100% | 2216.72 | 258 / 258 | 95% | 5.09 | 218 / 230 |
liver | 100% | 1389.03 | 226 / 226 | 81% | 3.34 | 328 / 406 |
adipose | 100% | 3308.01 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 7.68 | 29 / 29 |
muscle | 100% | 2490.99 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2481.75 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 7.18 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.73 | 1 / 1 |
blood vessel | 100% | 2055.32 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 2493.33 | 851 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 4.96 | 73 / 80 |
peripheral blood | 73% | 1026.93 | 676 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008380 | Biological process | RNA splicing |
GO_0006397 | Biological process | mRNA processing |
GO_0005730 | Cellular component | nucleolus |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0003723 | Molecular function | RNA binding |
Gene name | RBM28 |
Protein name | Alternative protein RBM28 RNA binding motif protein 28 isoform 1 RNA-binding protein 28 (RNA-binding motif protein 28) RNA binding motif protein 28 RNA binding motif protein 28 isoform 2 |
Synonyms | |
Description | FUNCTION: Nucleolar component of the spliceosomal ribonucleoprotein complexes. . |
Accessions | H7C5G8 C9JE21 Q9NW13 ENST00000487602.5 A0A0S2Z5E5 ENST00000459726.1 L8ECH6 ENST00000478061.5 C9JAA9 ENST00000415472.6 [Q9NW13-2] A0A024R753 ENST00000223073.6 [Q9NW13-1] |