Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 24% ± 6% | |
endothelial cell | 3 studies | 17% ± 1% | |
GABAergic neuron | 3 studies | 26% ± 6% | |
glutamatergic neuron | 3 studies | 37% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 972.44 | 1445 / 1445 | 100% | 23.26 | 183 / 183 |
prostate | 100% | 1094.16 | 245 / 245 | 100% | 21.15 | 502 / 502 |
uterus | 100% | 1323.09 | 170 / 170 | 100% | 25.35 | 459 / 459 |
breast | 100% | 1141.06 | 459 / 459 | 100% | 41.41 | 1116 / 1118 |
brain | 100% | 1139.33 | 2636 / 2642 | 100% | 23.59 | 705 / 705 |
thymus | 100% | 1199.81 | 653 / 653 | 100% | 24.51 | 603 / 605 |
lung | 100% | 1005.85 | 576 / 578 | 100% | 25.97 | 1155 / 1155 |
skin | 100% | 1608.69 | 1809 / 1809 | 100% | 33.15 | 470 / 472 |
liver | 100% | 777.70 | 226 / 226 | 100% | 17.34 | 404 / 406 |
bladder | 100% | 1165.90 | 21 / 21 | 99% | 19.86 | 501 / 504 |
ovary | 100% | 1240.16 | 180 / 180 | 99% | 19.39 | 427 / 430 |
intestine | 100% | 1079.84 | 966 / 966 | 99% | 21.11 | 523 / 527 |
pancreas | 100% | 756.88 | 327 / 328 | 99% | 18.35 | 177 / 178 |
stomach | 100% | 862.11 | 359 / 359 | 99% | 21.76 | 283 / 286 |
kidney | 100% | 1054.71 | 89 / 89 | 98% | 18.93 | 887 / 901 |
adrenal gland | 100% | 1547.94 | 258 / 258 | 95% | 17.79 | 219 / 230 |
adipose | 100% | 1131.92 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 929.63 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.59 | 29 / 29 |
spleen | 100% | 1274.69 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.83 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.49 | 1 / 1 |
muscle | 100% | 1150.79 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 680.12 | 844 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 1184.29 | 887 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 14.61 | 74 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006974 | Biological process | DNA damage response |
GO_0043627 | Biological process | response to estrogen |
GO_0045815 | Biological process | transcription initiation-coupled chromatin remodeling |
GO_0005730 | Cellular component | nucleolus |
GO_0048188 | Cellular component | Set1C/COMPASS complex |
GO_0044665 | Cellular component | MLL1/2 complex |
GO_0035097 | Cellular component | histone methyltransferase complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0071339 | Cellular component | MLL1 complex |
GO_0044666 | Cellular component | MLL3/4 complex |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0042393 | Molecular function | histone binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
Gene name | RBBP5 |
Protein name | Retinoblastoma-binding protein 5 (RBBP-5) (Retinoblastoma-binding protein RBQ-3) |
Synonyms | RBQ3 |
Description | FUNCTION: In embryonic stem (ES) cells, plays a crucial role in the differentiation potential, particularly along the neural lineage, regulating gene induction and H3 'Lys-4' methylation at key developmental loci, including that mediated by retinoic acid (By similarity). Does not affect ES cell self-renewal (By similarity). Component or associated component of some histone methyltransferase complexes which regulates transcription through recruitment of those complexes to gene promoters . As part of the MLL1/MLL complex, involved in mono-, di- and trimethylation at 'Lys-4' of histone H3 . Histone H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation . In association with ASH2L and WDR5, stimulates the histone methyltransferase activities of KMT2A, KMT2B, KMT2C, KMT2D, SETD1A and SETD1B . . |
Accessions | ENST00000264515.11 [Q15291-1] ENST00000367164.1 [Q15291-2] Q15291 |