Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 3 studies | 23% ± 2% | |
dendritic cell | 3 studies | 26% ± 4% |
Insufficient scRNA-seq data for expression of RABGGTA at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3361.61 | 1445 / 1445 | 100% | 34.57 | 183 / 183 |
ovary | 100% | 1816.47 | 180 / 180 | 100% | 34.15 | 430 / 430 |
pancreas | 100% | 1401.64 | 328 / 328 | 100% | 26.79 | 178 / 178 |
skin | 100% | 2153.57 | 1809 / 1809 | 100% | 32.92 | 472 / 472 |
thymus | 100% | 2173.30 | 653 / 653 | 100% | 42.11 | 605 / 605 |
uterus | 100% | 1769.32 | 170 / 170 | 100% | 36.94 | 459 / 459 |
liver | 100% | 1109.50 | 226 / 226 | 100% | 19.01 | 405 / 406 |
kidney | 100% | 1774.37 | 89 / 89 | 100% | 22.62 | 898 / 901 |
lung | 100% | 2166.05 | 578 / 578 | 100% | 29.03 | 1151 / 1155 |
intestine | 100% | 1670.77 | 966 / 966 | 100% | 28.07 | 525 / 527 |
prostate | 100% | 2106.70 | 245 / 245 | 100% | 34.82 | 500 / 502 |
adrenal gland | 100% | 2025.24 | 258 / 258 | 100% | 31.67 | 229 / 230 |
stomach | 100% | 1650.86 | 359 / 359 | 99% | 24.62 | 284 / 286 |
breast | 100% | 1777.35 | 459 / 459 | 99% | 26.82 | 1108 / 1118 |
bladder | 100% | 1463.71 | 21 / 21 | 99% | 30.89 | 498 / 504 |
brain | 98% | 1417.71 | 2602 / 2642 | 100% | 20.76 | 705 / 705 |
adipose | 100% | 1617.33 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 43.26 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 38.40 | 29 / 29 |
spleen | 100% | 2781.94 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 42.95 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 25.49 | 1 / 1 |
blood vessel | 100% | 1496.76 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1378.90 | 801 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 1620.11 | 907 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 1170.98 | 837 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007601 | Biological process | visual perception |
GO_0018344 | Biological process | protein geranylgeranylation |
GO_0036211 | Biological process | protein modification process |
GO_0005968 | Cellular component | Rab-protein geranylgeranyltransferase complex |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0004663 | Molecular function | Rab geranylgeranyltransferase activity |
Gene name | RABGGTA |
Protein name | Geranylgeranyl transferase type-2 subunit alpha (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha) Geranylgeranyl transferase type-2 subunit alpha (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit alpha) (Rab geranyl-geranyltransferase subunit alpha) (Rab GG transferase alpha) (Rab GGTase alpha) (Rab geranylgeranyltransferase subunit alpha) Rab geranylgeranyltransferase subunit alpha |
Synonyms | |
Description | FUNCTION: Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -XXCC, -XCXC and -CCXX, such as RAB1A, RAB3A, RAB5A and RAB7A. . FUNCTION: Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to cysteines occuring in specific C-terminal amino acid sequences. . FUNCTION: Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to cysteines occuring in specific C-terminal amino acid sequences. . FUNCTION: Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to cysteines occuring in specific C-terminal amino acid sequences. .; FUNCTION: Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -XXCC, -XCXC and -CCXX, such as RAB1A, RAB3A, RAB5A and RAB7A. . |
Accessions | ENST00000644383.1 H0YKP6 ENST00000560521.5 ENST00000560127.1 H0YLG7 Q92696 ENST00000399409.7 Q6FHF7 ENST00000560777.5 ENST00000646658.1 ENST00000216840.11 ENST00000560243.5 H0YMG5 H0YLH3 H0YKZ8 ENST00000558376.5 ENST00000559974.5 |