Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 26% ± 7% | |
microglial cell | 8 studies | 27% ± 10% | |
macrophage | 5 studies | 28% ± 9% | |
oligodendrocyte | 5 studies | 22% ± 6% | |
astrocyte | 4 studies | 26% ± 6% | |
dendritic cell | 4 studies | 16% ± 1% | |
GABAergic neuron | 3 studies | 51% ± 6% | |
glutamatergic neuron | 3 studies | 61% ± 7% | |
oligodendrocyte precursor cell | 3 studies | 30% ± 6% | |
fibroblast | 3 studies | 20% ± 4% | |
monocyte | 3 studies | 21% ± 5% | |
interneuron | 3 studies | 42% ± 22% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 45% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2532.10 | 459 / 459 | 100% | 44.92 | 1118 / 1118 |
kidney | 100% | 1768.96 | 89 / 89 | 100% | 40.24 | 901 / 901 |
lung | 100% | 2710.60 | 578 / 578 | 100% | 47.74 | 1155 / 1155 |
ovary | 100% | 2174.26 | 180 / 180 | 100% | 50.10 | 430 / 430 |
uterus | 100% | 2574.87 | 170 / 170 | 100% | 51.55 | 459 / 459 |
brain | 100% | 2206.87 | 2636 / 2642 | 100% | 51.85 | 705 / 705 |
esophagus | 100% | 2397.67 | 1445 / 1445 | 99% | 39.16 | 182 / 183 |
adrenal gland | 100% | 1739.86 | 258 / 258 | 99% | 46.03 | 228 / 230 |
thymus | 100% | 1809.12 | 651 / 653 | 99% | 36.81 | 601 / 605 |
prostate | 100% | 1846.12 | 245 / 245 | 99% | 22.38 | 497 / 502 |
bladder | 100% | 2486.52 | 21 / 21 | 99% | 39.94 | 498 / 504 |
liver | 100% | 1141.61 | 226 / 226 | 99% | 23.96 | 401 / 406 |
skin | 100% | 2326.85 | 1809 / 1809 | 98% | 37.17 | 464 / 472 |
intestine | 100% | 2340.52 | 965 / 966 | 97% | 20.94 | 509 / 527 |
stomach | 98% | 1397.02 | 353 / 359 | 97% | 22.14 | 277 / 286 |
pancreas | 89% | 632.13 | 292 / 328 | 99% | 37.85 | 176 / 178 |
adipose | 100% | 2594.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2604.53 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.78 | 29 / 29 |
muscle | 100% | 7967.08 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2024.49 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 47.82 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.83 | 1 / 1 |
heart | 99% | 2873.45 | 854 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 22.53 | 74 / 80 |
peripheral blood | 36% | 392.40 | 335 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032482 | Biological process | Rab protein signal transduction |
GO_0032456 | Biological process | endocytic recycling |
GO_0009306 | Biological process | protein secretion |
GO_0006887 | Biological process | exocytosis |
GO_0008333 | Biological process | endosome to lysosome transport |
GO_0030163 | Biological process | protein catabolic process |
GO_0006914 | Biological process | autophagy |
GO_0005886 | Cellular component | plasma membrane |
GO_0005764 | Cellular component | lysosome |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0030140 | Cellular component | trans-Golgi network transport vesicle |
GO_0005776 | Cellular component | autophagosome |
GO_0005768 | Cellular component | endosome |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0019003 | Molecular function | GDP binding |
GO_0005525 | Molecular function | GTP binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | RAB12 |
Protein name | RAB12, member RAS oncogene family Ras-related protein Rab-12 |
Synonyms | |
Description | FUNCTION: The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. That Rab may play a role in protein transport from recycling endosomes to lysosomes regulating, for instance, the degradation of the transferrin receptor. Involved in autophagy (By similarity). . |
Accessions | A0A3B3ITT1 Q6IQ22 ENST00000649141.2 |