Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 4 studies | 21% ± 3% | |
glutamatergic neuron | 4 studies | 46% ± 17% | |
GABAergic neuron | 3 studies | 40% ± 8% | |
transit amplifying cell | 3 studies | 22% ± 6% | |
interneuron | 3 studies | 34% ± 15% | |
astrocyte | 3 studies | 23% ± 5% | |
oligodendrocyte | 3 studies | 21% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 33% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 868.22 | 1444 / 1445 | 100% | 30.98 | 183 / 183 |
ovary | 100% | 719.77 | 180 / 180 | 100% | 17.75 | 429 / 430 |
breast | 100% | 1124.71 | 459 / 459 | 100% | 22.46 | 1113 / 1118 |
stomach | 100% | 589.89 | 359 / 359 | 99% | 23.92 | 284 / 286 |
lung | 99% | 824.75 | 575 / 578 | 100% | 23.57 | 1151 / 1155 |
intestine | 100% | 658.71 | 964 / 966 | 99% | 24.14 | 523 / 527 |
bladder | 100% | 967.29 | 21 / 21 | 99% | 19.91 | 497 / 504 |
skin | 100% | 1378.94 | 1808 / 1809 | 98% | 24.23 | 461 / 472 |
uterus | 100% | 966.80 | 170 / 170 | 98% | 18.46 | 448 / 459 |
prostate | 100% | 822.27 | 245 / 245 | 97% | 13.56 | 487 / 502 |
pancreas | 100% | 593.70 | 327 / 328 | 97% | 11.66 | 173 / 178 |
brain | 96% | 544.48 | 2528 / 2642 | 96% | 11.27 | 680 / 705 |
thymus | 100% | 1008.39 | 653 / 653 | 89% | 7.76 | 537 / 605 |
kidney | 99% | 495.43 | 88 / 89 | 87% | 10.61 | 783 / 901 |
liver | 100% | 580.83 | 226 / 226 | 79% | 8.45 | 319 / 406 |
adrenal gland | 100% | 573.56 | 258 / 258 | 74% | 5.91 | 170 / 230 |
adipose | 100% | 1201.57 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1055.09 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.89 | 1 / 1 |
blood vessel | 100% | 873.97 | 1334 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 463.44 | 240 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 18.67 | 44 / 45 |
heart | 96% | 491.10 | 825 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 11.91 | 23 / 29 |
eye | 0% | 0 | 0 / 0 | 75% | 7.32 | 60 / 80 |
peripheral blood | 26% | 453.54 | 242 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1990481 | Biological process | mRNA pseudouridine synthesis |
GO_0031119 | Biological process | tRNA pseudouridine synthesis |
GO_0001522 | Biological process | pseudouridine synthesis |
GO_0008380 | Biological process | RNA splicing |
GO_0006397 | Biological process | mRNA processing |
GO_1902036 | Biological process | regulation of hematopoietic stem cell differentiation |
GO_2000380 | Biological process | regulation of mesoderm development |
GO_0017148 | Biological process | negative regulation of translation |
GO_0005634 | Cellular component | nucleus |
GO_0009982 | Molecular function | pseudouridine synthase activity |
GO_0019899 | Molecular function | enzyme binding |
GO_0160150 | Molecular function | tRNA pseudouridine(13) synthase activity |
GO_0003723 | Molecular function | RNA binding |
Gene name | PUS7 |
Protein name | Pseudouridylate synthase 7 homolog (EC 5.4.99.-) Pseudouridylate synthase 7 Pseudouridine synthase 7 |
Synonyms | KIAA1897 |
Description | FUNCTION: Pseudouridylate synthase that catalyzes pseudouridylation of RNAs . Acts as a regulator of protein synthesis in embryonic stem cells by mediating pseudouridylation of RNA fragments derived from tRNAs (tRFs): pseudouridylated tRFs inhibit translation by targeting the translation initiation complex . Also catalyzes pseudouridylation of mRNAs: mediates pseudouridylation of mRNAs with the consensus sequence 5'-UGUAG-3' . Acts as a regulator of pre-mRNA splicing by mediating pseudouridylation of pre-mRNAs at locations associated with alternatively spliced regions . Pseudouridylation of pre-mRNAs near splice sites directly regulates mRNA splicing and mRNA 3'-end processing . In addition to mRNAs and tRNAs, binds other types of RNAs, such as snRNAs, Y RNAs and vault RNAs, suggesting that it can catalyze pseudouridylation of many RNA types . . |
Accessions | ENST00000481939.5 Q96PZ0 ENST00000356362.6 [Q96PZ0-1] ENST00000482157.1 H0Y863 A3R6R7 ENST00000469408.6 [Q96PZ0-1] E7EUH7 |