Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 4 studies | 24% ± 5% | |
hepatocyte | 3 studies | 37% ± 15% | |
GABAergic neuron | 3 studies | 31% ± 2% | |
glutamatergic neuron | 3 studies | 42% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 29% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 189.55 | 1445 / 1445 | 100% | 5.24 | 183 / 183 |
breast | 100% | 258.95 | 459 / 459 | 100% | 5.37 | 1117 / 1118 |
lung | 100% | 299.44 | 577 / 578 | 100% | 5.22 | 1154 / 1155 |
uterus | 100% | 234.16 | 170 / 170 | 99% | 4.53 | 456 / 459 |
ovary | 100% | 270.48 | 180 / 180 | 99% | 3.08 | 427 / 430 |
thymus | 100% | 471.39 | 653 / 653 | 99% | 5.87 | 600 / 605 |
prostate | 100% | 241.00 | 245 / 245 | 99% | 3.92 | 497 / 502 |
bladder | 100% | 192.29 | 21 / 21 | 99% | 4.46 | 497 / 504 |
liver | 100% | 427.93 | 226 / 226 | 99% | 3.54 | 400 / 406 |
brain | 99% | 152.58 | 2611 / 2642 | 100% | 2.64 | 702 / 705 |
stomach | 100% | 155.66 | 359 / 359 | 98% | 3.97 | 280 / 286 |
pancreas | 100% | 187.35 | 327 / 328 | 98% | 3.31 | 174 / 178 |
intestine | 100% | 228.12 | 966 / 966 | 97% | 3.49 | 509 / 527 |
adrenal gland | 100% | 281.52 | 258 / 258 | 92% | 2.44 | 212 / 230 |
kidney | 100% | 216.80 | 89 / 89 | 92% | 3.16 | 828 / 901 |
skin | 100% | 268.40 | 1806 / 1809 | 86% | 2.46 | 407 / 472 |
lymph node | 0% | 0 | 0 / 0 | 100% | 6.27 | 29 / 29 |
spleen | 100% | 283.09 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.27 | 1 / 1 |
adipose | 100% | 228.02 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 182.33 | 1330 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 3.24 | 44 / 45 |
muscle | 97% | 134.99 | 782 / 803 | 0% | 0 | 0 / 0 |
heart | 94% | 112.88 | 809 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 89% | 252.24 | 830 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 50% | 1.16 | 40 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0031119 | Biological process | tRNA pseudouridine synthesis |
GO_0031053 | Biological process | primary miRNA processing |
GO_0005737 | Cellular component | cytoplasm |
GO_0005739 | Cellular component | mitochondrion |
GO_0005634 | Cellular component | nucleus |
GO_0009982 | Molecular function | pseudouridine synthase activity |
GO_0070878 | Molecular function | primary miRNA binding |
GO_0106029 | Molecular function | tRNA pseudouridine synthase activity |
GO_0005515 | Molecular function | protein binding |
GO_0160148 | Molecular function | tRNA pseudouridine(55) synthase activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | PUS10 |
Protein name | tRNA pseudouridine synthase Pus10 (Hup10) (EC 5.4.99.25) (Coiled-coil domain-containing protein 139) (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) Pseudouridine synthase 10 |
Synonyms | DOBI CCDC139 |
Description | FUNCTION: Protein with different functions depending on its subcellular location: involved in miRNA processing in the nucleus and acts as a tRNA pseudouridylate synthase in the cytoplasm . In the cytoplasm, acts as a pseudouridylate synthase by catalyzing synthesis of pseudouridine(54) and pseudouridine(55) from uracil-54 and uracil-55, respectively, in the psi GC loop of a subset of tRNAs . tRNA pseudouridylate synthase activity is enhanced by the presence of 1-methyladenosine at position 53-61 of tRNAs . Does not show tRNA pseudouridylate synthase activity in the nucleus . In the nucleus, promotes primary microRNAs (pri-miRNAs) processing independently of its RNA pseudouridylate synthase activity . Binds pri-miRNAs . Modulator of TRAIL/TNFSF10-induced cell death via activation of procaspase-8 and BID cleavage . Required for the progression of the apoptotic signal through intrinsic mitochondrial cell death . . |
Accessions | ENST00000430495.5 C9JNL8 Q3MIT2 ENST00000407787.5 ENST00000421319.5 A8MUL8 ENST00000398658.2 ENST00000316752.11 |