PTCRA report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
plasmacytoid dendritic cell	19 studies	53% ± 11%	Explore
platelet	9 studies	38% ± 16%	Explore
megakaryocyte	3 studies	27% ± 12%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	97%	93.63	561 / 578	34%	0.72	388 / 1155
spleen	100%	162.88	241 / 241	0%	0	0 / 0
peripheral blood	85%	236.56	786 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	79%	4.52	23 / 29
eye	0%	0	0 / 0	78%	5.07	62 / 80
skin	0%	0.02	3 / 1809	62%	3.82	292 / 472
brain	6%	1.33	163 / 2642	40%	1.51	284 / 705
tonsil	0%	0	0 / 0	38%	0.72	17 / 45
prostate	17%	3.81	42 / 245	15%	0.27	74 / 502
thymus	5%	0.63	31 / 653	25%	83.29	150 / 605
breast	7%	1.93	34 / 459	18%	0.38	206 / 1118
kidney	3%	0.46	3 / 89	21%	0.39	192 / 901
pancreas	2%	0.33	5 / 328	21%	0.37	37 / 178
liver	14%	2.50	32 / 226	8%	0.17	32 / 406
intestine	12%	2.16	119 / 966	7%	0.15	39 / 527
uterus	1%	0.06	1 / 170	13%	0.27	61 / 459
stomach	1%	0.18	4 / 359	11%	0.18	32 / 286
adipose	12%	2.76	147 / 1204	0%	0	0 / 0
blood vessel	10%	2.99	133 / 1335	0%	0	0 / 0
bladder	0%	0	0 / 21	10%	0.20	48 / 504
adrenal gland	4%	0.57	11 / 258	5%	0.09	11 / 230
esophagus	0%	0.05	5 / 1445	5%	0.09	10 / 183
ovary	0%	0	0 / 180	4%	0.06	16 / 430
heart	2%	0.31	14 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1