PRPF39 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	6 studies	28% ± 6%	Explore
endothelial cell	5 studies	23% ± 8%	Explore
GABAergic neuron	5 studies	37% ± 17%	Explore
epithelial cell	4 studies	25% ± 5%	Explore
glutamatergic neuron	4 studies	52% ± 18%	Explore
astrocyte	4 studies	23% ± 9%	Explore
microglial cell	3 studies	17% ± 0%	Explore
oligodendrocyte precursor cell	3 studies	26% ± 5%	Explore
interneuron	3 studies	43% ± 20%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	37% ± 17%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	3367.85	459 / 459	100%	23.18	1118 / 1118
esophagus	100%	2871.57	1445 / 1445	100%	19.46	183 / 183
prostate	100%	3830.64	245 / 245	100%	23.52	502 / 502
uterus	100%	3940.96	170 / 170	100%	22.06	459 / 459
lung	100%	2803.34	577 / 578	100%	16.86	1155 / 1155
bladder	100%	2932.10	21 / 21	100%	16.99	503 / 504
ovary	100%	3955.68	180 / 180	100%	12.72	429 / 430
thymus	100%	3579.57	653 / 653	100%	18.02	603 / 605
pancreas	100%	2437.48	328 / 328	99%	17.26	177 / 178
adrenal gland	100%	3079.77	258 / 258	99%	13.94	228 / 230
brain	99%	2685.30	2615 / 2642	100%	19.08	705 / 705
stomach	100%	2457.33	359 / 359	98%	13.27	281 / 286
kidney	100%	2341.94	89 / 89	98%	13.76	885 / 901
intestine	100%	3401.41	966 / 966	98%	14.01	517 / 527
skin	100%	3661.27	1809 / 1809	94%	15.28	442 / 472
liver	99%	1337.89	224 / 226	91%	8.27	371 / 406
lymph node	0%	0	0 / 0	100%	17.00	29 / 29
spleen	100%	3438.93	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	16.35	45 / 45
ureter	0%	0	0 / 0	100%	7.79	1 / 1
adipose	100%	2918.20	1203 / 1204	0%	0	0 / 0
blood vessel	100%	2430.89	1333 / 1335	0%	0	0 / 0
muscle	100%	1680.45	799 / 803	0%	0	0 / 0
heart	98%	1334.44	842 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	66%	8.52	53 / 80
peripheral blood	40%	1102.76	375 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0