Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| endothelial cell | 5 studies | 20% ± 4% | |
| classical monocyte | 3 studies | 17% ± 1% | |
| epithelial cell | 3 studies | 30% ± 4% | |
| GABAergic neuron | 3 studies | 28% ± 6% | |
| glutamatergic neuron | 3 studies | 39% ± 12% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 30% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 812.49 | 1445 / 1445 | 100% | 9.31 | 183 / 183 |
| lung | 100% | 885.33 | 578 / 578 | 100% | 8.98 | 1155 / 1155 |
| ovary | 100% | 798.60 | 180 / 180 | 100% | 9.90 | 430 / 430 |
| breast | 100% | 1164.93 | 459 / 459 | 100% | 11.28 | 1117 / 1118 |
| uterus | 100% | 848.84 | 170 / 170 | 100% | 10.08 | 458 / 459 |
| thymus | 100% | 1010.35 | 653 / 653 | 100% | 11.90 | 603 / 605 |
| prostate | 100% | 732.48 | 245 / 245 | 99% | 8.60 | 499 / 502 |
| pancreas | 100% | 521.44 | 327 / 328 | 99% | 8.75 | 177 / 178 |
| brain | 99% | 527.10 | 2617 / 2642 | 100% | 6.85 | 704 / 705 |
| bladder | 100% | 860.86 | 21 / 21 | 99% | 9.78 | 498 / 504 |
| liver | 100% | 538.25 | 226 / 226 | 99% | 6.05 | 400 / 406 |
| stomach | 100% | 710.00 | 359 / 359 | 98% | 8.56 | 281 / 286 |
| intestine | 100% | 877.13 | 966 / 966 | 98% | 8.27 | 516 / 527 |
| kidney | 100% | 859.01 | 89 / 89 | 97% | 7.39 | 875 / 901 |
| adrenal gland | 100% | 893.30 | 258 / 258 | 96% | 7.60 | 221 / 230 |
| skin | 100% | 1092.61 | 1809 / 1809 | 95% | 7.00 | 448 / 472 |
| adipose | 100% | 1084.33 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 907.59 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 8.27 | 29 / 29 |
| spleen | 100% | 770.82 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 8.75 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 2.80 | 1 / 1 |
| muscle | 100% | 939.35 | 802 / 803 | 0% | 0 | 0 / 0 |
| heart | 97% | 604.65 | 837 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 95% | 644.64 | 878 / 929 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 83% | 4.14 | 66 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0000350 | Biological process | generation of catalytic spliceosome for second transesterification step |
| GO_0008380 | Biological process | RNA splicing |
| GO_0006397 | Biological process | mRNA processing |
| GO_0046540 | Cellular component | U4/U6 x U5 tri-snRNP complex |
| GO_0016607 | Cellular component | nuclear speck |
| GO_0005682 | Cellular component | U5 snRNP |
| GO_0071021 | Cellular component | U2-type post-spliceosomal complex |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005681 | Cellular component | spliceosomal complex |
| GO_0005634 | Cellular component | nucleus |
| GO_0005515 | Molecular function | protein binding |
| Gene name | PRPF18 |
| Protein name | Pre-mRNA-splicing factor 18 (PRP18 homolog) (hPRP18) Pre-mRNA processing factor 18 Alternative protein PRPF18 Pre-mRNA-splicing factor 18 Pre-mRNA-splicing factor 18 (PRP18 homolog) |
| Synonyms | HPRP18 |
| Description | FUNCTION: Participates in the second step of pre-mRNA splicing. . |
| Accessions | M0R3G1 Q5T9P7 ENST00000601460.5 L8E7W4 ENST00000417658.5 Q99633 M0QXX3 M0QXG2 ENST00000320054.4 ENST00000595538.5 ENST00000596044.5 ENST00000378572.8 [Q99633-1] Q5T9P8 |
