Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 5 studies | 20% ± 6% | |
endothelial cell | 3 studies | 20% ± 3% | |
epithelial cell | 3 studies | 34% ± 9% | |
GABAergic neuron | 3 studies | 29% ± 7% | |
astrocyte | 3 studies | 17% ± 0% | |
glutamatergic neuron | 3 studies | 37% ± 11% | |
oligodendrocyte precursor cell | 3 studies | 17% ± 1% | |
basal cell | 3 studies | 22% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 28% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 5344.09 | 89 / 89 | 100% | 49.34 | 901 / 901 |
ovary | 100% | 3992.24 | 180 / 180 | 100% | 44.90 | 430 / 430 |
pancreas | 100% | 2721.84 | 328 / 328 | 100% | 37.20 | 178 / 178 |
prostate | 100% | 7049.93 | 245 / 245 | 100% | 71.63 | 502 / 502 |
thymus | 100% | 7307.00 | 653 / 653 | 100% | 52.90 | 605 / 605 |
brain | 100% | 5215.00 | 2641 / 2642 | 100% | 61.24 | 705 / 705 |
skin | 100% | 3563.59 | 1808 / 1809 | 100% | 89.88 | 472 / 472 |
breast | 100% | 3682.55 | 459 / 459 | 100% | 51.24 | 1117 / 1118 |
intestine | 100% | 3605.29 | 966 / 966 | 100% | 33.58 | 526 / 527 |
uterus | 100% | 4915.18 | 170 / 170 | 100% | 43.74 | 458 / 459 |
liver | 100% | 3360.23 | 226 / 226 | 100% | 31.93 | 405 / 406 |
lung | 100% | 3557.48 | 576 / 578 | 100% | 42.69 | 1155 / 1155 |
stomach | 100% | 3747.82 | 359 / 359 | 100% | 31.47 | 285 / 286 |
bladder | 100% | 4712.86 | 21 / 21 | 100% | 46.26 | 502 / 504 |
esophagus | 100% | 3409.59 | 1445 / 1445 | 99% | 30.18 | 181 / 183 |
adrenal gland | 100% | 5920.31 | 258 / 258 | 99% | 33.49 | 227 / 230 |
eye | 0% | 0 | 0 / 0 | 100% | 67.05 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.00 | 29 / 29 |
muscle | 100% | 6046.40 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4040.37 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 41.05 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.99 | 1 / 1 |
adipose | 100% | 3108.01 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3952.66 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 6355.60 | 855 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 38% | 694.67 | 357 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016266 | Biological process | O-glycan processing |
GO_0071711 | Biological process | basement membrane organization |
GO_0007605 | Biological process | sensory perception of sound |
GO_0010467 | Biological process | gene expression |
GO_0021542 | Biological process | dentate gyrus development |
GO_0051674 | Biological process | localization of cell |
GO_0042552 | Biological process | myelination |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0150103 | Biological process | reactive gliosis |
GO_0035269 | Biological process | protein O-linked mannosylation |
GO_0000139 | Cellular component | Golgi membrane |
GO_0016020 | Cellular component | membrane |
GO_0030145 | Molecular function | manganese ion binding |
GO_0008375 | Molecular function | acetylglucosaminyltransferase activity |
GO_0030246 | Molecular function | carbohydrate binding |
GO_0005515 | Molecular function | protein binding |
GO_0047223 | Molecular function | beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity |
Gene name | POMGNT1 |
Protein name | Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) (Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1) Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase (POMGnT1) (EC 2.4.1.-) Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 (POMGnT1) (EC 2.4.1.-) (UDP-GlcNAc:alpha-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I.2) (GnT I.2) Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) |
Synonyms | DKFZp761B182 UNQ746/PRO1475 MGAT1.2 |
Description | FUNCTION: Participates in O-mannosyl glycosylation by catalyzing the addition of N-acetylglucosamine to O-linked mannose on glycoproteins . Catalyzes the synthesis of the GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moiety on alpha-dystroglycan and other O-mannosylated proteins, providing the necessary basis for the addition of further carbohydrate moieties . Is specific for alpha linked terminal mannose and does not have MGAT3, MGAT4, MGAT5, MGAT7 or MGAT8 activity. . FUNCTION: Participates in O-mannosyl glycosylation by catalyzing the addition of N-acetylglucosamine to O-linked mannose on glycoproteins. Catalyzes the synthesis of the GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moiety on alpha-dystroglycan and other O-mannosylated proteins, providing the necessary basis for the addition of further carbohydrate moieties. Is specific for alpha linked terminal mannose. . FUNCTION: Participates in O-mannosyl glycosylation by catalyzing the addition of N-acetylglucosamine to O-linked mannose on glycoproteins. Catalyzes the synthesis of the GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moiety on alpha-dystroglycan and other O-mannosylated proteins, providing the necessary basis for the addition of further carbohydrate moieties. Is specific for alpha linked terminal mannose. . FUNCTION: Participates in O-mannosyl glycosylation by catalyzing the addition of N-acetylglucosamine to O-linked mannose on glycoproteins. Catalyzes the synthesis of the GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moiety on alpha-dystroglycan and other O-mannosylated proteins, providing the necessary basis for the addition of further carbohydrate moieties. Is specific for alpha linked terminal mannose. . FUNCTION: Participates in O-mannosyl glycosylation by catalyzing the addition of N-acetylglucosamine to O-linked mannose on glycoproteins. Catalyzes the synthesis of the GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moiety on alpha-dystroglycan and other O-mannosylated proteins, providing the necessary basis for the addition of further carbohydrate moieties. Is specific for alpha linked terminal mannose. . |
Accessions | A0A8I5KQE4 A0A8I5KPT5 A0A8I5KVA5 ENST00000685230.1 ENST00000687149.1 ENST00000686379.1 ENST00000686737.1 [Q8WZA1-1] ENST00000690678.1 [Q8WZA1-1] Q68CV6 A0A8I5KR25 A0A8I5KTS5 ENST00000396420 ENST00000692322.1 ENST00000692369.1 ENST00000371984.8 [Q8WZA1-1] Q8WZA1 A0A8I5QJA9 ENST00000687683.1 [Q8WZA1-1] ENST00000685444.1 ENST00000692635.1 ENST00000693218.1 ENST00000691243.1 ENST00000691209.1 ENST00000689756.1 ENST00000396420.8 [Q8WZA1-1] ENST00000371992.1 [Q8WZA1-2] A0A8I5QJV3 A0A8I5KNB7 ENST00000687197.1 ENST00000688608.1 A0A8I5KSR6 |