Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 20 studies | 27% ± 12% | |
pericyte | 18 studies | 24% ± 7% | |
oligodendrocyte | 15 studies | 48% ± 18% | |
oligodendrocyte precursor cell | 12 studies | 34% ± 14% | |
endothelial cell | 11 studies | 29% ± 11% | |
adipocyte | 10 studies | 53% ± 19% | |
astrocyte | 8 studies | 25% ± 10% | |
myofibroblast cell | 7 studies | 23% ± 7% | |
smooth muscle cell | 7 studies | 21% ± 6% | |
capillary endothelial cell | 6 studies | 22% ± 5% | |
GABAergic neuron | 3 studies | 19% ± 2% | |
epithelial cell | 3 studies | 20% ± 3% | |
glial cell | 3 studies | 26% ± 6% | |
neuron | 3 studies | 17% ± 1% | |
adventitial cell | 3 studies | 20% ± 2% | |
Schwann cell | 3 studies | 40% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 8295.81 | 2619 / 2642 | 99% | 26.11 | 698 / 705 |
skin | 99% | 7037.76 | 1793 / 1809 | 98% | 21.44 | 463 / 472 |
breast | 100% | 16417.69 | 459 / 459 | 96% | 11.42 | 1068 / 1118 |
ovary | 100% | 10107.33 | 180 / 180 | 91% | 9.90 | 392 / 430 |
lung | 100% | 9485.20 | 577 / 578 | 87% | 7.80 | 1010 / 1155 |
kidney | 99% | 5845.52 | 88 / 89 | 88% | 10.86 | 793 / 901 |
thymus | 100% | 8468.40 | 651 / 653 | 86% | 9.40 | 521 / 605 |
pancreas | 89% | 3332.91 | 293 / 328 | 96% | 15.16 | 170 / 178 |
intestine | 100% | 8328.19 | 966 / 966 | 84% | 6.54 | 444 / 527 |
prostate | 100% | 7759.80 | 244 / 245 | 81% | 5.92 | 405 / 502 |
stomach | 93% | 4875.19 | 333 / 359 | 85% | 7.00 | 244 / 286 |
adrenal gland | 97% | 4041.15 | 251 / 258 | 78% | 7.12 | 179 / 230 |
bladder | 100% | 8918.62 | 21 / 21 | 72% | 5.13 | 361 / 504 |
esophagus | 86% | 6066.56 | 1247 / 1445 | 80% | 5.97 | 147 / 183 |
uterus | 100% | 14572.54 | 170 / 170 | 64% | 5.76 | 294 / 459 |
adipose | 100% | 19763.75 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.31 | 1 / 1 |
blood vessel | 100% | 9910.74 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 9716.79 | 858 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 20.13 | 79 / 80 |
spleen | 98% | 5060.85 | 236 / 241 | 0% | 0 | 0 / 0 |
muscle | 88% | 2906.52 | 707 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 47% | 2.57 | 21 / 45 |
lymph node | 0% | 0 | 0 / 0 | 28% | 1.15 | 8 / 29 |
liver | 5% | 122.44 | 11 / 226 | 21% | 1.81 | 87 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1904261 | Biological process | positive regulation of basement membrane assembly involved in embryonic body morphogenesis |
GO_0070507 | Biological process | regulation of microtubule cytoskeleton organization |
GO_0010470 | Biological process | regulation of gastrulation |
GO_0010717 | Biological process | regulation of epithelial to mesenchymal transition |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0045180 | Cellular component | basal cortex |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0045171 | Cellular component | intercellular bridge |
GO_0005515 | Molecular function | protein binding |
Gene name | PHLDB1 |
Protein name | Pleckstrin homology-like domain family B member 1 variant 4 PHLDB1 protein Pleckstrin homology-like domain family B member 1 (Protein LL5-alpha) Pleckstrin homology like domain family B member 1 |
Synonyms | LL5A DLNB07 KIAA0638 |
Description | |
Accessions | A0A087WTZ7 ENST00000600882.6 [Q86UU1-1] ENST00000361417.6 [Q86UU1-1] Q96C94 ENST00000356063.9 [Q86UU1-2] B0YJ65 ENST00000528594.5 [Q86UU1-3] ENST00000534140.2 ENST00000530994.5 [Q86UU1-3] A0A087WZL0 Q86UU1 ENST00000532639.3 Q96D60 |