PGC report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
type II pneumocyte	11 studies	54% ± 27%	Explore
type I pneumocyte	5 studies	21% ± 6%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	95%	4966.18	232 / 245	79%	172.82	395 / 502
lung	98%	26664.89	568 / 578	56%	1271.07	649 / 1155
pancreas	98%	4216.16	322 / 328	53%	578.96	95 / 178
stomach	98%	2322072.64	351 / 359	48%	1515.32	138 / 286
esophagus	58%	2951.35	838 / 1445	38%	1249.20	70 / 183
liver	71%	324.23	160 / 226	21%	168.65	84 / 406
spleen	74%	235.13	179 / 241	0%	0	0 / 0
intestine	54%	752.98	525 / 966	20%	910.55	104 / 527
uterus	66%	211.84	113 / 170	1%	1.46	5 / 459
bladder	57%	187.90	12 / 21	7%	82.32	37 / 504
adrenal gland	64%	351.82	166 / 258	0%	0	0 / 230
ovary	64%	197.14	115 / 180	0%	0.13	1 / 430
breast	47%	433.64	215 / 459	3%	3.38	34 / 1118
kidney	48%	122.28	43 / 89	0%	0.34	3 / 901
thymus	43%	128.94	282 / 653	0%	0.06	2 / 605
blood vessel	39%	149.62	525 / 1335	0%	0	0 / 0
adipose	38%	780.46	460 / 1204	0%	0	0 / 0
brain	37%	98.55	977 / 2642	0%	0.14	2 / 705
skin	36%	161.67	657 / 1809	1%	0.25	3 / 472
heart	36%	152.83	310 / 861	0%	0	0 / 0
peripheral blood	35%	96.49	326 / 929	0%	0	0 / 0
muscle	32%	77.75	258 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1