Insufficient scRNA-seq data for expression of PCDHB6 at single-cell level.
Insufficient scRNA-seq data for expression of PCDHB6 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 171.11 | 2627 / 2642 | 95% | 6.67 | 669 / 705 |
ovary | 100% | 173.64 | 180 / 180 | 62% | 3.69 | 267 / 430 |
kidney | 87% | 60.58 | 77 / 89 | 69% | 4.69 | 618 / 901 |
breast | 100% | 166.96 | 459 / 459 | 54% | 2.47 | 609 / 1118 |
lung | 99% | 99.67 | 571 / 578 | 44% | 2.59 | 509 / 1155 |
adrenal gland | 69% | 36.30 | 178 / 258 | 70% | 3.05 | 161 / 230 |
bladder | 100% | 100.43 | 21 / 21 | 37% | 2.43 | 188 / 504 |
prostate | 94% | 74.98 | 231 / 245 | 42% | 0.80 | 210 / 502 |
pancreas | 78% | 40.60 | 257 / 328 | 55% | 1.33 | 98 / 178 |
skin | 72% | 56.52 | 1307 / 1809 | 55% | 5.11 | 259 / 472 |
uterus | 99% | 232.25 | 169 / 170 | 24% | 2.21 | 110 / 459 |
thymus | 98% | 70.10 | 639 / 653 | 22% | 0.44 | 134 / 605 |
esophagus | 76% | 66.81 | 1096 / 1445 | 40% | 3.07 | 74 / 183 |
blood vessel | 100% | 256.83 | 1335 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 111.21 | 1197 / 1204 | 0% | 0 | 0 / 0 |
heart | 91% | 60.16 | 781 / 861 | 0% | 0 | 0 / 0 |
intestine | 79% | 77.40 | 766 / 966 | 11% | 0.51 | 57 / 527 |
stomach | 55% | 43.93 | 196 / 359 | 21% | 0.78 | 59 / 286 |
spleen | 64% | 28.53 | 154 / 241 | 0% | 0 | 0 / 0 |
muscle | 34% | 14.25 | 275 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 18% | 0.38 | 8 / 45 |
liver | 5% | 1.84 | 12 / 226 | 12% | 0.59 | 50 / 406 |
eye | 0% | 0 | 0 / 0 | 16% | 0.64 | 13 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007416 | Biological process | synapse assembly |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0009988 | Biological process | cell-cell recognition |
GO_0007399 | Biological process | nervous system development |
GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005509 | Molecular function | calcium ion binding |
GO_0042802 | Molecular function | identical protein binding |
Gene name | PCDHB6 |
Protein name | Protocadherin beta 6 Protocadherin beta-6 (PCDH-beta-6) |
Synonyms | |
Description | FUNCTION: Calcium-dependent cell-adhesion protein involved in cells self-recognition and non-self discrimination. Thereby, it is involved in the establishment and maintenance of specific neuronal connections in the brain. . |
Accessions | ENST00000708361.1 ENST00000622991.1 ENST00000231136.4 Q9Y5E3 A0A096LNH7 |