Insufficient scRNA-seq data for expression of PCDHB4 at single-cell level.
Insufficient scRNA-seq data for expression of PCDHB4 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 581.52 | 2637 / 2642 | 98% | 11.59 | 690 / 705 |
pancreas | 100% | 456.56 | 327 / 328 | 95% | 5.64 | 169 / 178 |
prostate | 100% | 312.47 | 244 / 245 | 92% | 4.65 | 463 / 502 |
breast | 100% | 657.18 | 459 / 459 | 90% | 5.33 | 1001 / 1118 |
lung | 99% | 385.38 | 574 / 578 | 77% | 2.84 | 884 / 1155 |
thymus | 99% | 298.13 | 649 / 653 | 59% | 1.41 | 356 / 605 |
kidney | 78% | 159.72 | 69 / 89 | 80% | 5.73 | 723 / 901 |
ovary | 100% | 593.51 | 180 / 180 | 55% | 1.48 | 236 / 430 |
esophagus | 83% | 254.89 | 1193 / 1445 | 70% | 2.82 | 129 / 183 |
bladder | 100% | 387.33 | 21 / 21 | 51% | 2.20 | 259 / 504 |
adrenal gland | 60% | 89.90 | 156 / 258 | 80% | 7.60 | 185 / 230 |
uterus | 99% | 734.74 | 169 / 170 | 37% | 1.80 | 170 / 459 |
intestine | 89% | 286.92 | 860 / 966 | 39% | 1.25 | 207 / 527 |
stomach | 67% | 191.77 | 241 / 359 | 55% | 1.91 | 156 / 286 |
skin | 68% | 155.04 | 1236 / 1809 | 44% | 2.15 | 209 / 472 |
adipose | 100% | 506.96 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 709.62 | 1335 / 1335 | 0% | 0 | 0 / 0 |
heart | 94% | 229.72 | 806 / 861 | 0% | 0 | 0 / 0 |
muscle | 89% | 160.33 | 718 / 803 | 0% | 0 | 0 / 0 |
spleen | 36% | 42.43 | 86 / 241 | 0% | 0 | 0 / 0 |
liver | 1% | 1.45 | 3 / 226 | 20% | 0.52 | 81 / 406 |
tonsil | 0% | 0 | 0 / 0 | 18% | 0.26 | 8 / 45 |
eye | 0% | 0 | 0 / 0 | 13% | 0.28 | 10 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007416 | Biological process | synapse assembly |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0007399 | Biological process | nervous system development |
GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | PCDHB4 |
Protein name | Protocadherin beta-4 (PCDH-beta-4) |
Synonyms | |
Description | FUNCTION: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain. |
Accessions | ENST00000194152.4 ENST00000708352.1 Q9Y5E5 |