Insufficient scRNA-seq data for expression of PCDHB16 at single-cell level.
Insufficient scRNA-seq data for expression of PCDHB16 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 98% | 137.90 | 2576 / 2642 | 82% | 8.58 | 576 / 705 |
kidney | 97% | 177.06 | 86 / 89 | 74% | 7.61 | 664 / 901 |
adrenal gland | 86% | 96.29 | 221 / 258 | 81% | 6.72 | 186 / 230 |
pancreas | 93% | 145.10 | 305 / 328 | 71% | 3.43 | 127 / 178 |
breast | 100% | 394.94 | 459 / 459 | 62% | 3.87 | 692 / 1118 |
prostate | 94% | 170.87 | 231 / 245 | 64% | 4.69 | 319 / 502 |
lung | 99% | 324.34 | 575 / 578 | 53% | 2.84 | 607 / 1155 |
bladder | 100% | 261.52 | 21 / 21 | 41% | 2.28 | 209 / 504 |
ovary | 100% | 547.12 | 180 / 180 | 39% | 2.02 | 169 / 430 |
esophagus | 81% | 169.89 | 1165 / 1445 | 56% | 2.94 | 103 / 183 |
uterus | 99% | 449.00 | 169 / 170 | 34% | 2.20 | 157 / 459 |
skin | 77% | 139.53 | 1384 / 1809 | 46% | 3.81 | 217 / 472 |
thymus | 100% | 238.28 | 650 / 653 | 21% | 0.90 | 129 / 605 |
intestine | 82% | 184.85 | 790 / 966 | 28% | 1.37 | 146 / 527 |
adipose | 100% | 314.60 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 565.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 220.13 | 854 / 861 | 0% | 0 | 0 / 0 |
stomach | 54% | 103.95 | 193 / 359 | 34% | 1.71 | 98 / 286 |
spleen | 75% | 71.10 | 181 / 241 | 0% | 0 | 0 / 0 |
muscle | 53% | 49.80 | 427 / 803 | 0% | 0 | 0 / 0 |
liver | 9% | 6.65 | 21 / 226 | 21% | 1.37 | 84 / 406 |
eye | 0% | 0 | 0 / 0 | 24% | 0.95 | 19 / 80 |
tonsil | 0% | 0 | 0 / 0 | 9% | 0.46 | 4 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007416 | Biological process | synapse assembly |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0016339 | Biological process | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | PCDHB16 |
Protein name | Alternative protein PCDHB16 Protocadherin beta-16 (PCDH-beta-16) (Protocadherin-3X) Protocadherin beta 16 |
Synonyms | PCDH3X KIAA1621 |
Description | FUNCTION: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain. |
Accessions | A0A096LP81 Q9NRJ7 ENST00000609684.3 L8E8M9 ENST00000708367.1 ENST00000625044.1 |