PCDHA1 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of PCDHA1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Number of samples
brain	96%	95.60	2549 / 2642	0%	0 / 705
breast	37%	9.10	168 / 459	0%	0 / 1118
intestine	35%	7.05	341 / 966	0%	0 / 527
pancreas	32%	5.88	104 / 328	0%	0 / 178
uterus	31%	5.23	53 / 170	0%	0 / 459
kidney	27%	5.52	24 / 89	0%	0 / 901
lung	24%	4.21	136 / 578	0%	0 / 1155
ovary	14%	2.18	25 / 180	0%	0 / 430
adrenal gland	12%	3.01	32 / 258	0%	0 / 230
thymus	10%	1.52	65 / 653	0%	0 / 605
stomach	6%	0.90	22 / 359	0%	0 / 286
adipose	6%	0.82	68 / 1204	0%	0 / 0
spleen	5%	0.84	13 / 241	0%	0 / 0
bladder	5%	0.57	1 / 21	0%	0 / 504
prostate	4%	0.70	11 / 245	0%	0 / 502
skin	4%	0.79	78 / 1809	0%	0 / 472
esophagus	3%	0.40	40 / 1445	0%	0 / 183
blood vessel	2%	0.32	29 / 1335	0%	0 / 0
heart	0%	0.03	2 / 861	0%	0 / 0
peripheral blood	0%	0.03	2 / 929	0%	0 / 0
muscle	0%	0.01	1 / 803	0%	0 / 0
abdomen	0%	0	0 / 0	0%	0 / 0
bone marrow	0%	0	0 / 0	0%	0 / 0
diaphragm	0%	0	0 / 0	0%	0 / 0
eye	0%	0	0 / 0	0%	0 / 80
gingiva	0%	0	0 / 0	0%	0 / 0
liver	0%	0	0 / 226	0%	0 / 406
lymph node	0%	0	0 / 0	0%	0 / 29
nasal cavity	0%	0	0 / 0	0%	0 / 0
nasopharynx	0%	0	0 / 0	0%	0 / 0
nose	0%	0	0 / 0	0%	0 / 0
placenta	0%	0	0 / 0	0%	0 / 0
spinal column	0%	0	0 / 0	0%	0 / 0
tonsil	0%	0	0 / 0	0%	0 / 45
ureter	0%	0	0 / 0	0%	0 / 1

GO_0007156	Biological process	homophilic cell adhesion via plasma membrane adhesion molecules
GO_0007155	Biological process	cell adhesion
GO_0007399	Biological process	nervous system development
GO_0005783	Cellular component	endoplasmic reticulum
GO_0005576	Cellular component	extracellular region
GO_0005886	Cellular component	plasma membrane
GO_0005509	Molecular function	calcium ion binding

Gene name	PCDHA1
Protein name	Protocadherin alpha-1 (PCDH-alpha-1)
Synonyms
Description	FUNCTION: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.
Accessions	ENST00000378133.4 [Q9Y5I3-3] Q9Y5I3 ENST00000708286.1 [Q9Y5I3-1] ENST00000708287.1 [Q9Y5I3-2] ENST00000504120.4 [Q9Y5I3-1] ENST00000394633.7 [Q9Y5I3-2] ENST00000708285.1 [Q9Y5I3-3]

PCDHA1 report