Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 15 studies | 53% ± 18% | |
oligodendrocyte precursor cell | 15 studies | 71% ± 19% | |
fibroblast | 12 studies | 27% ± 11% | |
smooth muscle cell | 11 studies | 30% ± 8% | |
glutamatergic neuron | 11 studies | 72% ± 20% | |
GABAergic neuron | 10 studies | 55% ± 21% | |
endothelial cell | 9 studies | 42% ± 20% | |
ciliated cell | 8 studies | 24% ± 12% | |
neuron | 7 studies | 42% ± 18% | |
myofibroblast cell | 7 studies | 32% ± 14% | |
basal cell | 7 studies | 26% ± 9% | |
epithelial cell | 6 studies | 38% ± 24% | |
interneuron | 6 studies | 45% ± 14% | |
retinal ganglion cell | 6 studies | 53% ± 19% | |
cardiac muscle cell | 6 studies | 56% ± 20% | |
connective tissue cell | 5 studies | 26% ± 8% | |
microglial cell | 5 studies | 32% ± 15% | |
oligodendrocyte | 4 studies | 35% ± 22% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 66% ± 13% | |
GABAergic interneuron | 3 studies | 46% ± 10% | |
granule cell | 3 studies | 43% ± 17% | |
progenitor cell | 3 studies | 32% ± 10% | |
club cell | 3 studies | 22% ± 4% | |
amacrine cell | 3 studies | 47% ± 23% | |
endocardial cell | 3 studies | 63% ± 12% | |
GABAergic amacrine cell | 3 studies | 50% ± 14% | |
ON-bipolar cell | 3 studies | 34% ± 6% | |
glycinergic amacrine cell | 3 studies | 25% ± 11% | |
respiratory goblet cell | 3 studies | 29% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 95% | 4904.65 | 1368 / 1445 | 81% | 14.10 | 148 / 183 |
uterus | 98% | 3257.55 | 167 / 170 | 77% | 14.64 | 354 / 459 |
skin | 76% | 1366.23 | 1367 / 1809 | 85% | 33.28 | 403 / 472 |
brain | 73% | 1751.22 | 1917 / 2642 | 85% | 13.12 | 596 / 705 |
prostate | 92% | 2001.72 | 225 / 245 | 64% | 5.08 | 319 / 502 |
stomach | 93% | 3049.30 | 333 / 359 | 52% | 8.37 | 149 / 286 |
bladder | 100% | 4872.57 | 21 / 21 | 43% | 5.63 | 217 / 504 |
thymus | 53% | 543.85 | 348 / 653 | 67% | 8.00 | 405 / 605 |
intestine | 83% | 3682.65 | 801 / 966 | 36% | 3.91 | 188 / 527 |
ovary | 28% | 331.89 | 50 / 180 | 86% | 10.90 | 370 / 430 |
breast | 38% | 424.13 | 175 / 459 | 68% | 6.42 | 760 / 1118 |
lung | 37% | 377.52 | 213 / 578 | 64% | 9.15 | 736 / 1155 |
blood vessel | 99% | 9123.56 | 1326 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 2170.77 | 238 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 18.62 | 66 / 80 |
pancreas | 0% | 0 | 0 / 328 | 81% | 11.87 | 145 / 178 |
tonsil | 0% | 0 | 0 / 0 | 60% | 6.31 | 27 / 45 |
heart | 42% | 1277.36 | 361 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 5% | 42.22 | 12 / 258 | 23% | 3.07 | 53 / 230 |
kidney | 4% | 48.03 | 4 / 89 | 10% | 0.77 | 92 / 901 |
adipose | 7% | 84.99 | 83 / 1204 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 2% | 0.23 | 8 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_0031092 | Cellular component | platelet alpha granule membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | PCDH7 |
Protein name | Protocadherin 7 Protocadherin-7 (Brain-heart protocadherin) (BH-Pcdh) |
Synonyms | BHPCDH |
Description | |
Accessions | ENST00000509759.2 A0A8Q3SIA5 ENST00000695920.1 ENST00000511884.7 ENST00000695919.1 A0A087X0C9 ENST00000695922.1 A0A087X2C4 A0A8V8TM73 ENST00000695921.1 ENST00000361762.3 [O60245-1] A0A8Q3SI47 A0A8Q3SI92 ENST00000621961.2 A0A8Q3SI70 O60245 |