Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 9 studies | 28% ± 9% | |
epithelial cell | 5 studies | 24% ± 6% | |
oligodendrocyte precursor cell | 5 studies | 26% ± 8% | |
astrocyte | 4 studies | 28% ± 10% | |
erythroblast | 3 studies | 34% ± 11% | |
GABAergic neuron | 3 studies | 44% ± 4% | |
glutamatergic neuron | 3 studies | 46% ± 2% | |
abnormal cell | 3 studies | 18% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 4251.86 | 226 / 226 | 100% | 39.69 | 406 / 406 |
ovary | 100% | 932.80 | 180 / 180 | 100% | 24.70 | 430 / 430 |
breast | 100% | 1269.96 | 459 / 459 | 100% | 27.70 | 1114 / 1118 |
brain | 100% | 1545.10 | 2631 / 2642 | 100% | 32.19 | 705 / 705 |
prostate | 100% | 1010.75 | 245 / 245 | 99% | 29.87 | 499 / 502 |
thymus | 100% | 1444.86 | 651 / 653 | 100% | 22.19 | 603 / 605 |
uterus | 100% | 966.67 | 170 / 170 | 99% | 21.83 | 456 / 459 |
stomach | 100% | 1382.45 | 359 / 359 | 99% | 18.89 | 283 / 286 |
pancreas | 99% | 915.13 | 326 / 328 | 99% | 12.32 | 177 / 178 |
bladder | 100% | 1272.81 | 21 / 21 | 98% | 20.92 | 496 / 504 |
intestine | 100% | 1451.83 | 965 / 966 | 98% | 23.03 | 518 / 527 |
skin | 100% | 1420.29 | 1806 / 1809 | 98% | 22.67 | 464 / 472 |
esophagus | 100% | 1234.38 | 1442 / 1445 | 98% | 16.61 | 179 / 183 |
lung | 98% | 1066.59 | 564 / 578 | 100% | 23.22 | 1151 / 1155 |
kidney | 100% | 2437.48 | 89 / 89 | 95% | 18.74 | 854 / 901 |
adrenal gland | 100% | 6137.73 | 258 / 258 | 91% | 17.58 | 209 / 230 |
adipose | 100% | 1300.75 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.44 | 29 / 29 |
muscle | 100% | 2329.45 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1053.69 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.14 | 1 / 1 |
blood vessel | 100% | 951.97 | 1329 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 2563.74 | 825 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 13.20 | 74 / 80 |
peripheral blood | 84% | 1349.61 | 778 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0019626 | Biological process | short-chain fatty acid catabolic process |
GO_0009081 | Biological process | branched-chain amino acid metabolic process |
GO_0006631 | Biological process | fatty acid metabolic process |
GO_1902494 | Cellular component | catalytic complex |
GO_0005829 | Cellular component | cytosol |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0004658 | Molecular function | propionyl-CoA carboxylase activity |
GO_0005515 | Molecular function | protein binding |
GO_0005524 | Molecular function | ATP binding |
Gene name | PCCB |
Protein name | Propionyl-CoA carboxylase beta chain, mitochondrial (PCCase subunit beta) (EC 6.4.1.3) (Propanoyl-CoA:carbon dioxide ligase subunit beta) Propionyl-CoA carboxylase subunit beta Propionyl-CoA carboxylase beta chain, mitochondrial (EC 6.4.1.3) (Propanoyl-CoA:carbon dioxide ligase subunit beta) |
Synonyms | hCG_15235 |
Description | FUNCTION: This is one of the 2 subunits of the biotin-dependent propionyl-CoA carboxylase (PCC), a mitochondrial enzyme involved in the catabolism of odd chain fatty acids, branched-chain amino acids isoleucine, threonine, methionine, and valine and other metabolites . Propionyl-CoA carboxylase catalyzes the carboxylation of propionyl-CoA/propanoyl-CoA to D-methylmalonyl-CoA/(S)-methylmalonyl-CoA . Within the holoenzyme, the alpha subunit catalyzes the ATP-dependent carboxylation of the biotin carried by the biotin carboxyl carrier (BCC) domain, while the beta subunit then transfers the carboxyl group from carboxylated biotin to propionyl-CoA (By similarity). Propionyl-CoA carboxylase also significantly acts on butyryl-CoA/butanoyl-CoA, which is converted to ethylmalonyl-CoA/(2S)-ethylmalonyl-CoA at a much lower rate . Other alternative minor substrates include (2E)-butenoyl-CoA/crotonoyl-CoA (By similarity). . |
Accessions | ENST00000482086.5 A0A1B2JLU8 C9JVW9 E9PEC3 Q9HBR7 ENST00000462637.5 ENST00000484181.5 ENST00000459873.1 E7EUY3 ENST00000494742.5 ENST00000466072.5 ENST00000483687.5 E7ENC1 H7C5C9 C9JVY9 C9JQS9 C9JAW3 F8WBI9 E7ETT4 P05166 ENST00000465423.5 ENST00000490504.5 ENST00000462542.5 E9PDR0 ENST00000469217.5 [P05166-2] ENST00000478469.5 ENST00000251654.9 [P05166-1] ENST00000468777.5 ENST00000471595.5 E7ETT1 E7EX59 |