PAQR4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	7 studies	22% ± 7%	Explore
retinal rod cell	5 studies	27% ± 12%	Explore
retinal cone cell	3 studies	48% ± 14%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	1336.09	2640 / 2642	100%	29.49	702 / 705
skin	99%	556.75	1799 / 1809	97%	21.63	460 / 472
esophagus	89%	252.96	1282 / 1445	99%	20.01	182 / 183
prostate	92%	419.93	226 / 245	95%	13.52	478 / 502
pancreas	99%	285.23	325 / 328	88%	9.89	157 / 178
stomach	87%	327.01	311 / 359	99%	22.62	283 / 286
breast	89%	195.61	409 / 459	96%	21.78	1076 / 1118
lung	93%	346.72	540 / 578	88%	11.80	1022 / 1155
intestine	75%	196.43	724 / 966	97%	22.26	513 / 527
adrenal gland	97%	337.44	249 / 258	53%	7.01	122 / 230
thymus	74%	132.18	481 / 653	53%	4.10	320 / 605
uterus	33%	49.98	56 / 170	90%	18.35	414 / 459
bladder	33%	57.43	7 / 21	80%	12.91	403 / 504
tonsil	0%	0	0 / 0	100%	20.77	45 / 45
ureter	0%	0	0 / 0	100%	5.75	1 / 1
spleen	99%	300.25	238 / 241	0%	0	0 / 0
ovary	6%	8.84	10 / 180	90%	16.08	389 / 430
muscle	95%	407.32	761 / 803	0%	0	0 / 0
kidney	55%	126.73	49 / 89	35%	2.64	319 / 901
lymph node	0%	0	0 / 0	90%	11.54	26 / 29
heart	87%	198.30	748 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	86%	6.87	69 / 80
adipose	83%	168.82	1001 / 1204	0%	0	0 / 0
peripheral blood	78%	304.82	727 / 929	0%	0	0 / 0
liver	23%	51.28	51 / 226	33%	3.92	136 / 406
blood vessel	42%	75.36	555 / 1335	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0